Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTGTGCATGCATGCAGgtaagtttgtttaattatttctgaaatggttaatcaatatggtgtatgcatgataattatcacttatgcaaattttgtttgcag

Basic information

species Glycine max
transcript GLYMA08G01990.3
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207800546|gb|GD774585.1|GD774585
EST:     CTGCACGGTCTGTGCATGCATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
EST: gi|23732520|gb|BU764420.1|BU764420
EST:     CTGCACGGTCTGTGCATGCATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
EST: gi|254328214|gb|GR835179.1|GR835179
EST:     CTGCACGGTCTGTGCATGCATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
EST: gi|192308244|gb|FK002756.1|FK002756
EST:     CTGCACGGTCTGTGCATGCATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
EST: gi|13312651|gb|BG406302.1|BG406302
EST:     CTGCACGGTCTGTGCATGCATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
EST: gi|31461793|gb|CD403821.1|CD403821
EST:     CTGCACGGTCTGTGCATGCATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
EST: gi|192299321|gb|FG992499.1|FG992499
EST:     CTGCACGGTCTGTGCATGCATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
EST: gi|16105268|gb|BI893008.1|BI893008
EST:     CTGCACGGTCTGTGCATGTATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
EST: gi|209703865|gb|BW656915.1|BW656915
EST:     CTGCACGGTCTGTGCATGCATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
EST: gi|192302560|gb|FG996296.1|FG996296
EST:     CTGCACGGTCTGTGCATGCATGCAG                         ACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA
genomic: CTGCACGGTCTGTGCATGCATGCAGgtaagtttgt ... ttgtttgcagACTCAGCACAAGATTGAGATGGACAAGCGAGACGGGAAATTTGGACCCCAA