Sequence
atgc intronic sequence ATGC exonic sequenceGGACATTAAAGGAGCAAACATATTGGTGGACCCTAGTGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATgtaagagcatttatatgttttactgttcaacttctatgacattggataatctgacttgagttgaatatcagcacaatgggtttgactgaccaggtcaacc...
Basic information
species | Glycine max |
transcript | GLYMA08G01880.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G093316_T01 (Zea mays), 5'ss of exon 7
GGACATTAAAGGAGCAAACATATTGGTGGACCCTAGTGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATgtaagagcatttatatgttttactgttcaacttctatgacattggataatctgacttgagttgaatatcagcacaatgggtttgactgaccaggtcaacc-
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AGACATCAAAGGTGCAAACATATTGGTAGACCCTAATGGCCGTGTAAAGCTTGCTGACTTTGGGATGGCAAAACATgtaagttt-tctgcatgttttcttattcctatttgtagaaagaaactcaaatgtcaacaatagtattttatcttcaccgaggaaatgcagcgcgttctttt
upper sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G63700.1 (Arabidopsis thaliana), 5'ss of exon 6
GGACATTAAAGGAGCAAACATATTGGTGGACCCTAGTGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATgtaagagcat-ttatatgt-tttactgttcaacttctatgacattggataatctgacttgagttgaata---tcagcacaatgggtttgactga-ccaggtcaacc----------------------------------------
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GGACATCAAAGGAGCAAATATATTGGTGGATCCTCATGGACGAGTAAAAGTTGCTGATTTTGGGATGGCAAAACATgtatgtatatgttctctgcattctctgttttgtttttgtcctgtttgaatttttcctttacgcagaaacaactgatctgaataaactatgctaagcctagttagaaactttcctaagtctaatacaaattcataaacaaaatgcag
upper sequence: GLYMA08G01880.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g03370.t01 (Vitis vinifera), 5'ss of exon 8
GGACATTAAAGGAGCAAACATATTGGTGGACCCTAGTGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATgtaagagcatttatatgttttactgttcaacttctatgacattggataatctgacttgagttgaatatcagcacaatgggtttgactgaccaggtcaacc--
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GGACATCAAAGGAGCAAATATACTGGTGGATCCCAATGGCCGTGTGAAATTGGCAGATTTTGGAATGGCAAAGCATgtaagagtattcatatgcattttttcttaaatactttgaaacca-atagaatgaag-aacctgtgtatctatttgacactttagatgttaaacttcagtggcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|9899677|gb|BE608645.1|BE608645EST: GGACCCTAGTGGGCGGATAAAAATTG-CAGATTTTTGGATGGCAAAGCAT ATAAGCGGGTGCTCTGGTCCATTTTCTTT
genomic: GGACCCTAGTGGGCGGATAAAA-TTGGCAGATTTTGGGATGGCAAAGCATgtaagagcat ... taatttgcagATAAGCGGGTCCTCTTGTCCATTTTCTTT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGACATTAAAGGAGCAAACATATTGGTGGACCCTAGTGGGCGGATAAAATTGGCAGATTTTGGGATGGCAAAGCATgtaagagcatttatatgttttactgttcaacttctatgacattggataatctgacttgagttgaatatcagcacaatgggtttgactgaccaggtcaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG