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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGAGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCTCTATATCATGATCTGAATGCTTACAGAGTTCTTTATGATGATgtaagtttattttcttcatctgtgacatgaccttattattcaaggttaaggaattgttggatgatgctcatctgcatgttaattgtcttttattcttatg...

Basic information

species Glycine max
transcript GLYMA08G01730.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 5
lower sequence: LOC_Os04g58750.2 (Oryza sativa), 5'ss of exon 5
GAGAGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCTCTATATCATGATCTGAATGCTTACAGAGTTCTTTATGATGATgtaagtttattttcttcatctgtgacatgaccttattattcaag-gttaaggaattgttggatgatgctcatctg-catgttaattgtcttttattcttatg
 ||||||| ||| |  || ||  | ||| |||| || || |||||||| || |||||||| || |||||||| ||||| ||||||||||| | ||||||||| |||  ||  | |  ||   |    | || | || ||    | |||  | ||   ||  ||| || | |  || ||                        
AAGAGTTGTTCTCTATCTGGCTGAGGCTTTAGAATATTGCACCAGCAAGGGGCGTGCTCTGTACCATGATCTTAATGCCTACAGAGTTCTCTTTGATGATgtgagt--atcatatagattgtttttgtaacgtgatcatctgtgtgttttgtaacatttctatgttgtttacatggcacag---------------------

upper sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 5
lower sequence: AT1G63500.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGAGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCTCTATATCATGATCTGAATGCTTACAGAGTTCTTTATGATGATgtaagtttattttcttcatctgtgacat--gaccttattattcaaggttaaggaattgttggatgatgctcatctgcatgttaattgtcttttattcttatg------------------------------
 ||||| ||| |     |||| |||||| |||| || |||||  ||||||||||||| || || |||||  | |||||||| |||||||| | |||||||||||||| |  || ||  | | | |  |  | |   || | | ||| |||      |||| ||| ||  | | | |  ||| |||  |  | | |   |||                               
AAGAGTAGCTTTACATATTGCTCAAGCTTTAGAATATTGTACTGGCAAAGGACGTGCACTCTACCATGACTTAAATGCTTATAGAGTTCTCTTTGATGATgtaagttaagcttatttttattttattttgggcaagataagttaagcttata----tgtttgattatttttaac-gtttgtcaatgttaatgtgtgaatatagaaacatcatcatatgttttgtgtttttag

upper sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 5
lower sequence: AT5G41260.1 (Arabidopsis thaliana), 5'ss of exon 4
GAGAGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCTCTATATCATGATCTGAATGCTTACAGAGTTCTTTATGATGATgtaagtttattttcttcatctgtgacatgaccttattattcaaggttaaggaattgttggatgatgctcatctgcatgttaattgtcttttattcttatg
|||||| ||| ||    |||| || || |||||||| |||||||||||||||||||| || || ||||| || |||||||| |||||||| | |||||||||||||||  |       | | |  | |    || |   |||||  ||    |   |    | ||| |  | ||  | |||                   
GAGAGTAGCTTTGCATATTGCTCAGGCGCTAGAGTATTGTACCAGCAAAGGACGTGCACTTTACCATGACCTAAATGCTTATAGAGTTCTCTTTGATGATgtaagtttgatacagatttttttacctttggtttctg--tcaagtgtatatgagaataattttatgtt--tttgtttcttag------------------

upper sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 5
lower sequence: Vv02s0025g03550.t01 (Vitis vinifera), 5'ss of exon 6
GAGAGTTGCTCTGTGCCTTGCCCAAGCTCTAGAGTACTGTACCAGCAAAGGACGTGCTCTATATCATGATCTGAATGCTTACAGAGTTCTTTATGATGATgtaagtttatt-ttcttcatctgtgacatgaccttattattcaaggttaaggaattgttgg-atgatgctcat-ctgcatgttaattgtcttttattcttatg
 || || ||| | |  ||||| |||||| | || || |||||||||||||||||||| || ||||||||||| |||||||| ||| || ||| ||||||||||||| | ||  | ||  ||  |   |||   || || ||     ||   ||||  |||  |   ||||| |  |  || | |                   
AAGGGTGGCTTTATATCTTGCACAAGCTTTGGAATATTGTACCAGCAAAGGACGTGCACTTTATCATGATCTTAATGCTTATAGAATTGTTTTTGATGATgtaagtatgttgctttttttcaattttatggtattttttttttctcttttagaatctttgatacattgctcttattaaatctcag------------------