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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTATCAAGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGGGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGgtataatattaataacttatcttgtatgcataattccatttccattgctatcatttggataaaattggctgctattgttgttcttatcatcttagcagttagtattataactatgtgctttgctttttcaattactttctcttcctactttttacactttggttatag

Basic information

species Glycine max
transcript GLYMA08G01040.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g31290.1 (Oryza sativa), 5'ss of exon 6
TTCTTATCAAGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGGGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGgtataatattaataacttatcttgtatgcataattccatttccattgctatcatttggataaaattggctgctattgttgttcttatcatcttagca-gttagtattataactatgtgctttgctttttcaattactttctcttcctactttttacactttggttatag
 |||||  | ||| ||||| |||| |  ||||| | |   |  |||||||| | | || || ||  |||||||||||| ||||||||||| ||||| ||||||    |  |  || | |||          |||| |   |  | ||  |    ||   |  | ||  ||| |     ||||||| |   ||||| | |||| |||| ||  |||   ||    ||   ||   | || || ||| | |     |              
ATCTTACTATGATATAAGGTCAGCGCTGAATGCCAAGATGGAGCTTCAAAACAAGGCACTGAGGCGTAGGAAACTTGACATACATTATTCCATTCCGAAGgta----accatcaaatcatc----------aattgccacttaactgaaaatgcttatctgcatttt-ctgttgcc--tgttcttgtg--cttagaatgttattattctagatattcactaaaattgagca--catttgcttttctttccccacag-------------

upper sequence: GLYMA08G01040.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv17s0000g00240.t01 (Vitis vinifera), 5'ss of exon 6
TTCTTATCAAGATCTAAGGGCAGCACAAAATGCAATGCAAGCACTTCAAAATAGGCCATTGGGGTCTAGGAAACTTGATATACATTATTCAATTCCAAAGgtataata-------ttaataacttatcttgtatgcataattccatttccattgctatcatttggataaaattg-gctgctattgttgttcttatcatcttag----cagttagtattataactat----gtgctttgctttttcaat----tactttctcttcc--tactttttacactttggttatag-----
||||||| | ||| ||||||||||   ||||||||||  ||| ||||| |||| |||| || |    |||||||||||||| ||||||||||||||||||||||  |        | || || |  |  || |  ||| ||    |||  |  | |||||| |  |     ||| | |   ||| |  ||   |     || |     | || |  || |   |||     || ||     | ||||     | |||| |  |    |  | |||  |  | |||  ||      
TTCTTATTATGATATAAGGGCAGCCAGAAATGCAATGAGAGCCCTTCAGAATAAGCCACTGAGACGGAGGAAACTTGATATTCATTATTCAATTCCAAAGgtatgttgagcatgttcaaaaaatcttgctgcacacatgatattgtttt-acagttatcatattcagtgttttgtgttagcattatcattgacaatgctttggatgctatttgggtttgtgtttattgaaatggttctgcatgtcaaggtgatgctttgttgtttgatgttctttttaactcggtgttatgttag