Sequence
atgc intronic sequence ATGC exonic sequenceCATGGAAGGAATTGTTGAGCAGGCTCGCGATGGCAGTACCCTACGCGTCTATTTGCTCCCAGAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatatatcataaatgctgttcctatttctaccctttcctaagcatgcaaataattgttttcctttaaattag
Basic information
species | Glycine max |
transcript | GLYMA08G00910.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G61780.1 (Arabidopsis thaliana), 5'ss of exon 6
CATGGAAGGAATTGTTGAGCAGGCTCGCGATGGCAGTACCCTACGCGTCTATTTGCTCCCAGAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatatatcataaatgctgttcctatttctaccctttcctaagcatgcaaataattgttttcctttaaattag-------------------
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CATGGAAGGTATTGTTGAGCAAGTCCGTGATGGCAGCACCATTCGGGTTTATCTTCTTCCGGAATTTCAGTTTGTTCAAGTATTTGTTGCTGGACTCCAGgtatgt----tatcttgtttccttgtttttactgcgtgaggagttgacattttaatttcatggtgtaagagtgctggaaattttctatgtag
upper sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 6
CATGGAAGGAATTGTTGAGCAGGCTCGCGATGGCAGTACCCTACGCGTCTATTTGCTCCCAGAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatatatc--------ataaatgctgttcctatttctacc--ctttcctaagcatgcaaataat----tgttttcctttaaattag-------------
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CATGCAAGGTATTGTTGAGCAGGTTCGAGATGGCAGTACCATCCGGGTCTATTTGCTTCCTGAATTCCAGTTTGTTCAAGTGTTTGTTGCAGGAATCCAGgtattgatccgcttttcatcagcactgtactagttagtggtgattttgataggtataatggtgatatatcagttttattcatagttgttgactcaggaaa
upper sequence: GLYMA08G00910.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv14s0068g00720.t01 (Vitis vinifera), 5'ss of exon 5
CATGGAAGGAATTGTTGAGCAGGCTCGCGATGGCAGTACCCTACGCGTCTATTTGCTCCCAGAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatatatcataaatgctgttcctatttctacccttt-cctaagcatgcaaataattg--------ttttcctttaaattag-----------------------------------------
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TATGCAGGGCATTGTTGAGCAAGTTCGTGATGGAAGTACAGTCCGAGTTTATTTGCTTCCAGAGTTTCAGTTTGTTCAGGTTTTTGTTGCCGGAATCCAGgtaagacatctgcatgttattattattattattttgggtctatttgtgaagggtattgcaatggggtttgcctattgttttggcacatatctcaatttccataattctcttgtggtaaattagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209717742|gb|BW654030.1|BW654030EST: ATTTGCTCCCAGAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAG GCCCCACAAATGGGAAGGAGAGCTGTACCTGAAAGTGCTACTGAATCAGAG
genomic: ATTTGCTCCCAGAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatatatca ... tttaaattagGCCCCACAAATGGGAAGGAGAGCTGTACCTGAAAGTGCTACTGAATCAGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CATGGAAGGAATTGTTGAGCAGGCTCGCGATGGCAGTACCCTACGCGTCTATTTGCTCCCAGAATTTCAGTTTGTCCAAGTTTTTGTTGCTGGAATTCAGgtatatatcataaatgctgttcctatttctaccctttcctaagcatgcaaataattgttttcctttaaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA