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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGCGCTATAAAGTTCCTTGGCAATCCTGACGAAAGGgtaagactagcctttctgaaccaaattacttgttttaagattgcaattaatgcttgcttctgatgcttttgtctaatggttttaaataactgcag

Basic information

species Glycine max
transcript GLYMA07G38050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 6
lower sequence: AT5G18620.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGCGCTATAAAGTTCCTTGGCAATCCTGACGAAAGGgtaagactagcctttctgaaccaaattacttgttttaagattgcaattaatgcttgcttctgatgcttttgtctaatggttttaaataactgcag
 |||||||||||||| || ||||| || ||||||||||||||||| || ||||| |||||  | || ||| | || || || || ||||| || ||||| ||||     | | |  |    |   |||| | ||  | | ||||| || ||     | |   | | || ||    ||  |||||||||| |||||
AGTTGCTCCAAAATCAACCCTTGGTAACTGGATGAATGAAATTCGCCGATTTTGTCCTGTCCTGCGTGCTGTGAAATTTCTCGGTAATCCCGAGGAAAGAgtaa-----gtcataatagctc---ttacat-ttgaatggttgca-tttatatgcacctggcaggattctgagatata-ttttaaataa-tgcag

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G06400.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGCGCTATAAAGTTCCTTGGCAATCCTGACGAAAGGgtaagac-tagcctttctgaaccaaattacttgttttaagattgcaattaatgcttgcttctgatgcttttgtctaatggttttaaataactgcag
||||||||||||||| || ||||| ||||||||||| |||||||| || ||||| |||||  |||| ||| | ||||||||||| |||||||| || |||||||| | |   || ||||   | | ||     ||| | |    |  |||   |  | ||||||    | || ||||  | |  |           
GGTTGCTCCAAAATCAACACTTGGTAATTGGATGAACGAAATTCGCCGGTTTTGTCCTGTCCTACGTGCTGTGAAGTTCCTTGGTAATCCTGAGGAGAGGgtaagtcatgagctgtctg---ccatttcagaatttcatgtaaacgtttatcccaggattctgaaatgtctg-ctaactgatgcag----------

upper sequence: GLYMA07G38050.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0020g01780.t01 (Vitis vinifera), 5'ss of exon 6
GGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGCGCTATAAAGTTCCTTGGCAATCCTGACGAAAGGgtaagac---tagcctttctgaaccaaattacttgttttaagattgcaattaatgcttgcttctgatgcttttgtctaatggttttaaataactgcag
 ||||| |||||||| |||||||| || ||||||||||||||||| || ||||| || ||| | || ||| | ||||| ||||| |||||||| ||||||||  | |    || |  |     |  | | | |  ||||    || || ||         |||   |||  ||  ||||   ||     |  ||||||
TGTTGCCCCAAAATCGACTCTTGGCAACTGGATGAATGAAATTCGACGTTTTTGTCCAGTTCTGCGTGCTGTGAAGTTTCTTGGAAATCCTGATGAAAGGgtgtgtcattcaggccctgctttcagagtaattctttttttatttacagtt---------ttccactgcactttgctaacacttc---gtctctgcag