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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaatatcttgtaatttcttgatataattttattatttggctactatgacatgctacagtcctcatgtttattgtatag

Basic information

species Glycine max
transcript GLYMA07G37050.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g06460.1 (Oryza sativa), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgt-aacaatatcttgtaa------tttcttgatataattttattatttggctactatgacatgctacagtcctcatgtttattgtatag
 || |||||||| |||||||||||||||   || || || ||||| |||||||| || || |||||||| |||||||| ||||| |||||||||| |||||| ||| | | ||| ||       |||||| |||          ||||    |       ||| || | |  |      | || | |||
GCTAATGCCTGGTTTTGATCCTGAAATTGCAAAATTAGCCCAGAGAGTCCTTATCAACCCTCGGAATATAGACTATCACACTGGTGTTTTTGCAAGCAAGgttaactagaccttctaccttagctttcttcataccgcagacacatttcatcatctc--tatgttaaaattgttgatgattttttctag

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g23610.1 (Oryza sativa), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaat-------atcttgtaatttcttgatataattttattatttggctactatgacatgctacagtcctcatgtttattgtatag
  | |||||||| ||||||||||| |||   || ||||| || ||| | ||||| ||||| || || ||||||||||||||||| || ||||| | |||||| ||  |       | ||     |||||  |||  ||   ||  |||| |     ||  |   | ||     ||| | | | |     
GTTGATGCCTGGTTTTGATCCTGAGATTGCAAAATTGGCCCAAAGGATTCTTATCAATCCTCGTAAAATTGACTATCATACTGGGGTCTTTGCGAGCAAGgttaccttgagattcaactcaagctttctccataatatgaaatcttttgacactattgtaaccttgcaacatccatatctctag-----

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G073774_T01 (Zea mays), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaatatcttgtaatttcttgatataattttattatttggctactatgacatgctacagtcctcatgtttattgtatag-------------------
 || ||||||||||||||||||||||||   || || || ||||| || ||||| ||||| ||||| ||||||||||| ||||| |||||||||| ||||||     | |  | ||  ||| | | |  |||  |   |||   |    ||||||  |  | |  || ||| | ||| || |                   
GCTGATGCCTGGATTTGATCCTGAAATTGCAAAATTAGCCCAGAGAGTTCTTATCAATCCTCGGAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgttcacctttgctctagcttcctcaaagtattccagacttttttt----tgacatagttgaataatc-tgtatgttgaatggtctattgatttttcaccag

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G145595_T02 (Zea mays), 5'ss of exon 5
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaatatctt----gtaatttcttga------tataattttattatttggc--tactatgacatgctacagtcctcatgtttattgtatag
| | |||||||| |||||||| || |||   || ||||| |||||| | ||||| | ||| || || ||||||||||| ||||| |||||||||| ||||||||   ||   |      ||| | || |      | |||| ||      ||    ||  || | |    | |||  |||||| | | |     
ATTAATGCCTGGGTTTGATCCCGAGATTGCAAAATTGGCGCAGAGGATTCTTATTAGTCCTCGTAAAATTGACTATCACACTGGTGTTTTTGCAAGCAAGgtaaagttaagctcaactcaatctttttaatgatgtgtaatcttccagcatgattgtataattatacctcaaagtattcatgtctctag-----

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 6
lower sequence: AT3G16950.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaacaatatcttgtaatttcttg-atataattttattatttggctactatgacatgctacagtcctcatgtttattgtatag----------------
 || |||||||||||||||||||| || || ||| | |||||||||||  | ||||||||  | || |||||||||||||||||||| ||||||| ||| || |   | |  | | ||   ||| | ||| |  |  | |||  ||| ||     ||     ||  |||| | |      ||                 
GCTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTAGCTCAGAGGGTTTTGATAAATCCAAGAAAGATTGACTATCATACTGGAGTCTTTGCAAGCAAAgtgagcctgttatatcatgcattgcaaatactgcttctctttctcta-tacagtgtgtccatgtattcatctgttaaacttaaatctattcttattcag

upper sequence: GLYMA07G37050.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G16155.1 (Arabidopsis thaliana), 5'ss of exon 6
ACTTATGCCTGGATTTGATCCTGAAATTAGCAAGTTGGCTCAGAGGGTCCTTATAAATCCCCGGAATATTGACTATCATACTGGAGTTTTTGCAACCAAGgtaa----caatatcttgtaatttcttgat---ataattttattatttggctactatgacatgctacagtcctcatgtttattgtatag
||| |||||||||||||||||||| || || ||| ||||||| ||||| || |||||| |  | || |||||||| ||||||||||| ||||||| ||| ||||       | |||  |   || |  ||   |||  ||  |||    |    | |   |   |    |  | | | || || || ||
ACTAATGCCTGGATTTGATCCTGAGATCAGTAAGCTGGCTCAAAGGGTTCTAATAAATACAAGAAAAATTGACTACCATACTGGAGTATTTGCAAGCAAAgtaagcctttttgtctcatgcattttaaattagatatcttccttacacagtgggtttacgaattttttttgttaacgcttctt-tacag