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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAGTTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTGgtcagtattcatttttacatcattttgatttagatccttatttttgtcaattatgtcctcattcattcttgtgatatgtttgctacattgcag

Basic information

species Glycine max
transcript GLYMA07G37040.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G37040.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G06670.2 (Arabidopsis thaliana), 5'ss of exon 8
CAAGAGTTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTGgtcagtattcat---ttttaca-tcattt-tgatttagatccttatttttgtcaattatgtcctcat-tcattcttgtgatatgtttgctacattgcag
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CATGATTTCTTCCGGAATCTGATGGGTGTTTTTAAAATATGCGAGGACTTGGAAAATGTTGATGGCCTTCACATGATATTCAACATTGTCAAGGGAATCAgttagtattcacaaacattataattattcatgtcttagatccacatatatcagaattatcttttgatgtccattatttcttttatctttttgtacgcag

upper sequence: GLYMA07G37040.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 5'ss of exon 8
CAAGAGTTTTTTCGGAAGCTGATGGAAGTATTCAGAATGTGTGAAGACTTGGAAAATATTGATGGCCTTCACATGATTTTCAAAATAGTCAAAGGGATTGgtcagtattca-tttttacatcattttgat-ttagatccttatttttgtcaattatgtcct---cattcattcttgtgatatgtttgctacattgcag-------
||||| ||||| |  |||||||||||  |||| || || || |||||||||||||| || ||||||||||||||||| | ||| || |||||||||||  ||||||  ||  ||||||| ||  | || |  || ||| | | ||| | |  |||||   |   | ||  ||      |      |      ||           
CAAGAATTTTTCCAAAAGCTGATGGACCTATTTAGGATATGCGAAGACTTGGAAAACATGGATGGCCTTCACATGATATACAAGATTGTCAAAGGGATCAgtcagtgctctctttttacttctctctgctactatatcttcaatttaggctcttatgatttatccgtttgttggcactaagaaccttgcgtgttattacttacag