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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAgtaagtttcagtcttggttctgactaattttattctgatttttctaattcggtgttggtttgttctgttttgaaatcatgcttcttggctccaactttgt...

Basic information

species Glycine max
transcript GLYMA07G35750.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G35750.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os11g38800.1 (Oryza sativa), 5'ss of exon 7
CTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAgtaagtttcagtct---tggttctgactaattttattctgatttttctaattcggtgttggtttgttctgttttgaaatcatgcttcttggctccaactttgt
|| ||  | |||||||||||||| |||||  | || ||||||||||||||||||  | ||||||||||||| ||||||||||||||||| |||  | | | |||   ||| ||| | | ||| |    | |  |   || |  | | ||   || |   |   |||||| ||   |      ||  |   |  
CTCTTTCTACTTCGAGCTGCTGGATTTCTGCTGCCATGCTATATCATGGCTTGGATATTCAGTATTTTGCATCGCCGGCGACAAAGACAGgtacttctaattctgtatggatctcattgattgt-caataaaatcattattgggctatt--cttatggaggaatgaaatgattggtggaccatctgatcctaa

upper sequence: GLYMA07G35750.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G303431_T01 (Zea mays), 5'ss of exon 7
CTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAgta-------------agtttca-------gtcttggttctgactaat-tttattctgatttttc----taattcggtgttggtttgttc---------tgttttgaaatcat----gcttcttggctccaactttgt--------------------------------------------------------------
|||||  |||||||||||||||| |||||  | || ||||| |||||||| |||  | ||||||||||||| ||||| ||||||||||| |||             | | ||        || |||||  |||  ||   || |||  | |  ||    || |   |   | |   || |         | ||||  ||  ||    |  || |||  | || | |||                                                              
CTTTTTCTGCTTCGAGCTGCTGGGTTTCTGCTGCCGTGCTACATCATGGCATGGATATTCAGTATTTTGCATCGCCGTCGACAAAGACAGgtacctcatttgacgcaatctcgagagatggtgttggtcatgaaaaaaacttgttccaaatcgtcatcatagtgtaggaataggaagtccaccgtagtatattttttaactatatgtggctcctggtcctaaatctgtcgatgatatggcacaccatccatctaagttctctgtgcttcttcttcttcctttgtctgcag

upper sequence: GLYMA07G35750.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
CTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAgtaagttt-cagtcttggttctgactaattttattctgatttttctaattcggtgttggtttgttctgttttgaaatcatgcttcttggctccaactttgt--
|||||  || | || ||||||||||| ||  | || | ||| ||||||||||||||||||||||| ||||| |||||  |||| ||||| || ||||   | | |      ||| || ||  ||  |   |||||| |||   ||  ||||            ||  | |  |||||| |    ||    |  
CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaataatttctaaagtgaatatttgcatcttc-cttttcttattttttgaaggttccgggaacacctaa--cgtatttcttgccatacaccgaatac

upper sequence: GLYMA07G35750.2 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02960.2 (Arabidopsis thaliana), 5'ss of exon 7
CTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAgtaagtttcagtcttggttctgactaattttattctgatttttctaattcggtgttggtttgttctgttttgaaatcatgcttcttggctccaactttgt-----------------
||| || |||| ||||||||||| |||||| | || |||||||||||||||||||| ||||||||| | || |||||  |||| ||||| || |||   |       |  ||      ||| | | ||   |  |  ||   | ||  | | || ||  |  || | |   |   |||   | ||||  |                 
CTTGTCCTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATCAGTATTCTACAGCGCCGAAGACAGAGACAGgttagtagtataagaactcatgcaaggatttttccggacagtcttttttttttcttactgttttatgaatcaaactgag--tcactggtatcgacttaatgtaacccgattgaacag

upper sequence: GLYMA07G35750.2 (Glycine max), 5'ss of exon 6
lower sequence: AT2G02960.5 (Arabidopsis thaliana), 5'ss of exon 5
----------CTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAgtaagtttcagtcttggttctgactaattttattctgatttttctaattcggtgttggtttgttctgttttgaaatcatgcttcttggctccaactttgt-----------------
          ||| || |||| ||||||||||| |||||| | || |||||||||||||||||||| ||||||||| | || |||||  |||| ||||| || |||   |       |  ||      ||| | | ||   |  |  ||   | ||  | | || ||  |  || | |   |   |||   | ||||  |                 
CTTATTTTAGCTTGTCCTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATCAGTATTCTACAGCGCCGAAGACAGAGACAGgttagtagtataagaactcatgcaaggatttttccggacagtcttttttttttcttactgttttatgaatcaaactgag--tcactggtatcgacttaatgtaacccgattgaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203126|gb|BI425894.1|BI425894
EST:     ATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAA                         GAAATTCTCATGGTTTTCATGTTACGGTGAAACAGGAAGCGGCAGCACTAG
genomic: ATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAgtaagtttca ... tatgttccagGAAATTCTCATGGTTTTCATGTTACGGTGAAACAGGAAGCGGCAGCACTAG