Sequence
atgc intronic sequence ATGC exonic sequenceATGTTGACATGCTTGAGAACATTGAAATTGGAGAACAGAAACGACGAGATGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGCGTATATGATGATAAgtaagatgcattactgttttcaatgtgttatagaaataatggaaaacattaactaacatgaactaatggaatagaaagaaatcatatgaagcctgtgctctcaatttcag
Basic information
species | Glycine max |
transcript | GLYMA07G34600.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G34600.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G109284_T01 (Zea mays), 5'ss of exon 6
ATGTTGACATGCTTGAGAACATTGAAATTGGAGAACAGAAACGACGAGATGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGCGTATATGATGATAAgtaagatgcattactgttttcaatgtgttatagaaataatggaaaacattaactaacatgaactaatggaatagaaagaaatcatatgaagcctgtgctctcaatttcag
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ACGCTGACATGCTTGAGAACATTGAGATTGGTGAGCAGAAACAAAGAGATGAAGCTTATAAGGCTTCAAAGAAGAAA---GGAACTTATGATGACAAgtaattttc-tta-tgcacataacatggtttttggttgttgctatgtctcagatttgtccccctaatacacattttattggttgtttgtag-------------------
upper sequence: GLYMA07G34600.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0078g00440.t01 (Vitis vinifera), 5'ss of exon 6
ATGTTGACATGCTTGAGAACATTGAAATTGGAGAACAGAAACGACGAGATGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGCGTATATGATGATAAgtaagatgcattactgttttcaatgtgttatagaaataatg-gaaaacattaactaacatgaactaatggaatagaaagaaatcatatgaagcctgtgctctcaatttcag
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ATGTTGATATGCTTGAAAATGTGGAGATTGGAGAGCAGAAGCGACGTGATGAGGCTTACAAGGCTGCCAAAAAGAAAACAGGGATTTATGAAGATAAgtaag-tccact--tgtctgtaat------cagcatttctgtgtgatcattattc--catgaat---------------atctctgactgctcttttgttctcatctttagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7639790|gb|AW734105.1|AW734105EST: GATGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGCGTATATGATGATAA GTTCACTGATGACCCCTCCACTGAGAAGAAAATGCTTCAACAGTATGATGA
genomic: GATGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGCGTATATGATGATAAgtaagatgca ... tcaatttcagGTTCACTGATGACCCCTCCACTGAGAAGAAAATGCTTCAACAGTATGATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGTTGACATGCTTGAGAACATTGAAATTGGAGAACAGAAACGACGAGATGAGGCTTATAAAGCTGCAAAAAAGAAAACTGGCGTATATGATGATAAgtaagatgcattactgttttcaatgtgttatagaaataatggaaaacattaactaacatgaactaatggaatagaaagaaatcatatgaagcctgtgctctcaatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA