Sequence
atgc intronic sequence ATGC exonic sequenceGCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGACCTTGGAGCCAAATGATGgttagttacgaacatacaattttgggtcaggcctttgtcatgtacttttctgtgttataattgccgagaaatatttgaatttctccattattttagttaa...
Basic information
species | Glycine max |
transcript | GLYMA07G33200.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G33200.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g52360.1 (Oryza sativa), 5'ss of exon 6
GCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGACCTTGGAGCCAAATGATGgttagttac--gaacatacaattttgggtcaggcctttgtcatgtacttttctgtgttataattgccgagaaatatttgaatttctccattattttagttaa
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GCACGCATCGCACTCAATGATATTGATGCTGCAGTTGAGAGCTTCAAGCATGCTCTGCAGTTGGAGCCAAACGATGgtttgtcccttgcccactcaattggctattaagtttcttcattggaagtttatatattttg--tgttcataaatctag------------------------
upper sequence: GLYMA07G33200.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv03s0063g01030.t01 (Vitis vinifera), 5'ss of exon 6
GCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGACCTTGGAGCCAAATGATGgttagttacgaacatacaattttgggtcaggcctttgtcatgt---acttttctgt--gttataattgccgagaaatatttgaatttctccattattttagttaa
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GCATACATGGCACTTAATGACATAGATGCTGCAGCAGAAAGTTTCAAGAAGGCGCTGGAACTAGAGCCAAATGATGgttagttaatttaacgtagttacttcttccagttttataaggtttggctccaatgttgattgaaatgattgatggat-tgtagaatgatgaatc--ttcaatt--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208028065|gb|GD824097.1|GD824097EST: TGCTGCAGTTGAAAGCTTTAAGAAGGCACTGACCTTGGAGCCAAATGATG CTGGAATAAAAAAGGAACTTGCTGCTGCTAGGAAGATG
genomic: TGCTGCAGTTGAAAGCTTTAAGAAGGCACTGACCTTGGAGCCAAATGATGgttagttacg ... ctattttcagCTGGAATAAAAAAGGAACTTGCTGCTGCTAGGAAGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATACATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAGAAGGCACTGACCTTGGAGCCAAATGATGgttagttacgaacatacaattttgggtcaggcctttgtcatgtacttttctgtgttataattgccgagaaatatttgaatttctccattattttagttaa
- - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG