1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAGgtgagtttagatacatagagtattttcttaggttattatacagctcaaattacaaatctgacatttccaaattccatgcatttggaacttgaccttgtttgttgtag
species | Glycine max |
transcript | GLYMA07G31090.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTT-GAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAG GTGT-AAAATATGGTTTCTTGCCATTATCTA-TTCATAGCAGGGGTT-CTGEST: gi|23728768|gb|BU762445.1|BU762445
genomic: TTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAGgtgagtttag ... tttgttgtagGTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTG
EST: GTTACTGCTGCTTGGATTAAGGGTGAAG GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGEST: gi|42722448|gb|CK768347.1|CK768347
genomic: GTTACTGCTGCTTGGATTAAGGGTGAAGgtgagtttag ... tttgttgtagGTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTG
EST: CCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAG GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGEST: gi|10255778|gb|BE823488.1|BE823488
genomic: CCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAGgtgagtttag ... tttgttgtagGTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTG
EST: NNTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAG GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGEST: gi|6964344|gb|AW433037.1|AW433037
genomic: CCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAGgtgagtttag ... tttgttgtagGTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTG
EST: CCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAG GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGEST: gi|13311994|gb|BG405645.1|BG405645
genomic: CCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAGgtgagtttag ... tttgttgtagGTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTG
EST: CCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAG GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTGEST: gi|254315266|gb|GR830259.1|GR830259
genomic: CCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAGgtgagtttag ... tttgttgtagGTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTG
EST: CCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAG GTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTG
genomic: CCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAGgtgagtttag ... tttgttgtagGTGTAAAAATATGGTTTCTTGCCATTATCTATTTCATAGCAGGGGTTCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGATTAAGGGTGAAGgtgagtttagatacatagagtattttcttaggttattatacagctcaaattacaaatctgacatttccaaattccatgcatttggaacttgaccttgtttgttgtag
- - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - GCTGCT