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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGCCGCCTTTTTTCCCAATAATCCATCATGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatcctcttatatatatatatttattttttttttttttttgggggggggggggggggttgggggaggaacttggttcctattatggcattgttt...

Basic information

species Glycine max
transcript GLYMA07G31090.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G31090.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0301g00030.t01 (Vitis vinifera), 5'ss of exon 6
AATTGGCCGCCTTTTTTCCCAATAATCCATCATGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatcctcttatatatatatatttattttttttttttttttgggggggggggggggggttgggggaggaacttggttcctattatggcattgttt
|||||||| || || |||||||| ||||||||||| ||||| |||||||| || |||||||| ||||| ||||| |||||||||||||| ||||| |||||||||        | | |||   |  || || || || | ||| ||                 |   |   | || ||   |  |  | | |  |    |
AATTGGCCACCATTCTTCCCAATTATCCATCATGATATTGCGAATGAAATACCGATTCATCTACAAAAGTTGCAGTATGTTGCATTTACGACATTCTTAGgtatgtctcttaataagatagtgactttgatattcttatatttcttttactaaatattcaacttcttgcatgcaaattttatattcctctagattcagat
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151393785|gb|EV263660.1|EV263660
EST:     TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG                         GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
EST: gi|10255778|gb|BE823488.1|BE823488
EST:     TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG                         GATTAGTGTTGTGNNTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
EST: gi|6964344|gb|AW433037.1|AW433037
EST:     TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAA                         GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
EST: gi|13311994|gb|BG405645.1|BG405645
EST:     TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAG                         GATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA
genomic: TCCAATTCATCTTCAAAAATTGCAATATGTTGCATTTACTACATTGTTAGgtatgctatc ... tattatgcagGATTAGTGTTGTGCCTTTTTTGGAATGTTATAGCTGTTACTGCTGCTTGGA