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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTATTGTCTACTTTAGCATTTACTGCTTTTGAACTTCCTCCAAATGGAGCTGTTGGAACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGgtaaggtttcaatatcttgacaatttttcttagtttcatgtttttactttttcttgatatggcagtcattctggcgagagacagacagatagaatgcatg...

Basic information

species Glycine max
transcript GLYMA07G30360.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 6
lower sequence: AT4G04850.2 (Arabidopsis thaliana), 5'ss of exon 5
TGTATTGTCTACTTTAGCATTTACTGCTTTTGAACTTCCTCCAAATGGAGCTGTTGGAACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGgtaaggtttcaatatcttgacaatttttcttagtttcatgtttttactttttcttgatatggcagtcattctggcgagagacagacagatagaatgc--atg----------------------------------------------------------------------------------------------
| | || |  ||    ||||| |||||||||||||| || |||||||||||  | |||||||||||| |||||||||| || || || ||||||||  |||||||||||    |  | |   ||| |  | | | || |||  ||  |  |   |  | |  ||   |||        || |||||   |    | |  |||                                                                                              
TTTGTTATGCACGGCTGCATTCACTGCTTTTGAACTCCCACCAAATGGAGCCATCGGAACAAAAATTCTGGAATTCCTCTTTCATTCAAGGCCTGACTTGgtaaggttttt-cacttggggtattatcatgattctcttgtcgtttttagtatcttttgtatcatgtatttcaaatttag-cagacgcctcttttcccaatgtgatcatggtctaataactgtcaatctctgatgttttttgttgggctgttagagctatatcctaatatgatctataatttctgtaaaactctag

upper sequence: GLYMA07G30360.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv00s0282g00020.t01 (Vitis vinifera), 5'ss of exon 5
TGTATTGTCTACTTTAGCATTTACTGCTTTTGAACTTCCTCCAAATGGAGCTGTTGGAACAAAAATTTTGGAATTCCTTTTCCACTCTAGGCCTGATCTGgtaaggtttcaatatcttgacaatttttcttagtttcatgtttttactt---tttcttgatatggca--gtcattctggcgagagacagacagatagaatgcatg
||| || |||||  | || || || || ||||||||||| || ||||| ||| ||||||| |  |||||||| |||||||||||||| || |||||| |||| ||     ||| ||||  | ||||   | | ||| ||  |  |  ||   || | | |||| |||   |||||||   |  |        ||| | |  | | 
TGTGTTATCTACACTTGCGTTCACAGCATTTGAACTTCCACCTAATGGGGCTATTGGAACTAGGATTTTGGAGTTCCTTTTCCACTCAAGACCTGATTTGgtgaga----aatctcttctctatttcattaattttaatagtaatgattaccttgcattatatagcactatcattcttctgtcatgattttggattggaatctt-