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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaattatatcaacatatttactagtatggtagagcttatgcatgatataaagtaaattttcattctcttgcag

Basic information

species Glycine max
transcript GLYMA07G18500.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18500.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv06s0004g06870.t01 (Vitis vinifera), 5'ss of exon 6
GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgta-gttcaattatatcaacat-atttactagtatggta-gagcttatgcatgatataaagtaaattttcattctcttgcag-------------------------------
  | ||| || | | |   || ||  | ||||| || ||||| ||||| |||||||||||||||||| |||||||||| |  ||| |||| || || || ||| |||     ||     ||| || |  |||    ||| ||  || |   |||  |   || ||| ||    |  ||| |                                
ATTGAGTGTGCCCAGTGGTGAAACCCGAGTTGATGATGCAGAATTTGAAGAGAATGAAGTTTATGCAGTTGATATAGTCATCAGCTCTGGTGATGGAAAAgtaagtttggacatgaatgcatgatgttttagcccagtatgattttgtaattgac-tgtcgttaatcttatggccattgtataatccgtggaaaaaaaaaaaaactattgcag

upper sequence: GLYMA07G18500.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0217g00020.t01 (Vitis vinifera), 5'ss of exon 5
GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaa----ttatatcaacatatttactagtatggtagagcttat---gcatgatataaagtaaattttcattctc---ttgcag
 || ||| |  | | ||| || || || ||||| || |||||||||||||||||||||||||||||| | |||||||| |||||||| || || || |||||| ||       | || | |||  |  || || | |  | || |  ||    | |  | |      |||||      ||   ||||||
ACTGAGTGTTCCCAGTCCAGAGACCAGAGTTGAGGATGCAGAGTTTGAGGAGAATGAAGTTTATGCAGTAGATATAGTCACAAGCACAGGTGATGGGAAGgtaattatgggtctgattttaacccaaatattattcttattgaccacatcttactttttgtgctcataatttctggaatcaaattgcag

upper sequence: GLYMA07G18500.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S119_137V6.1 (Physcomitrella patens), 5'ss of exon 5
GCTTAGTTTGTCTAATCCGGACACAAGGGTTGACGAAGCAGAGTTTGAGGAGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgt-agttcaattatatcaacatatttacta-gtatggtagagcttat-gcatgatataaagtaaat------tttcattctcttgcag------------
  | |||     |||| |||| ||| | || || || || || |||||||| || |||||||| ||||||||||| |||||||||||||| || || ||||| |  |    ||| |     | | ||||  |  ||  |||| || | | |   |    | ||  |      | | | |  | || |             
TTTGAGTGCTGGTAATGCGGAGACACGCGTAGATGATGCTGAATTTGAGGAAAACGAAGTTTACGCAATTGATATTGTAACAAGCACTGGTGAAGGAAAGgtgaaattttctattttgttctgtatactctgggtgcaagagtttgttgtacattgctgattacgtagaatgtcttagtgacctgaatcgaggtttttta

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207765785|gb|GD735104.1|GD735104
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208306547|gb|GE106684.1|GE106684
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208160809|gb|GD960855.1|GD960855
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGA
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGA
EST: gi|193501140|gb|FK465077.1|FK465077
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAA
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAA
EST: gi|193621810|gb|FK569158.1|FK569158
EST:     CACTGGGGACGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
genomic: CACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|193510114|gb|FK472100.1|FK472100
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAG
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAG
EST: gi|193320841|gb|FK286880.1|FK286880
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGACGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|193539850|gb|FK493836.1|FK493836
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|207803044|gb|GD773557.1|GD773557
EST:     AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGG
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGG
EST: gi|208026639|gb|GD822951.1|GD822951
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208267336|gb|GE064089.1|GE064089
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208305567|gb|GE107020.1|GE107020
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|193418197|gb|FK384689.1|FK384689
EST:     AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGG
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGG
EST: gi|193383713|gb|FK346848.1|FK346848
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAG
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAG
EST: gi|208149329|gb|GD944547.1|GD944547
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAA
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAA
EST: gi|193695733|gb|FK640491.1|FK640491
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208276298|gb|GE075250.1|GE075250
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|193391906|gb|FK355587.1|FK355587
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208291449|gb|GE096715.1|GE096715
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208299197|gb|GE100516.1|GE100516
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAA
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAA
EST: gi|13562960|gb|BG551180.1|BG551180
EST:     AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208340150|gb|GE133192.1|GE133192
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAG
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAG
EST: gi|208300530|gb|GE099749.1|GE099749
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|193617128|gb|FK571154.1|FK571154
EST:     AATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208188449|gb|GD985163.1|GD985163
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|193384579|gb|FK350137.1|FK350137
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|193713291|gb|FK654444.1|FK654444
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCA
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCA
EST: gi|193305168|gb|FK270385.1|FK270385
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAG
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAG
EST: gi|193543551|gb|FK502016.1|FK502016
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|207693534|gb|GD674507.1|GD674507
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|207725479|gb|GD704071.1|GD704071
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC
EST: gi|208280699|gb|GE075899.1|GE075899
EST:     AGAACGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGATGGCAAG                         CCTAAGCTGTTGGATGAGAAGCAGACAACTATTTATAAGAGGGCTGTTGAC
genomic: AGAATGAAGTTTATGCAATTGATATAGTAACAAGCACTGGGGACGGCAAGgtagttcaat ... tctcttgcagCCTAAGCTGTTGGATGAGAAGCAGACAACTATCTATAAGAGGGCTGTTGAC