1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CAGAAGCATGTTTGGAAGTGTGCCATGAGATGAATGTCAAGGCCATTGATCTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCATgtaagtatatatgctcttatgtttcactcaattaaaaagctaaaggttcaaatttgcatattccattcagtttgattaggtggctaatttggtttttatttcttag
species | Glycine max |
transcript | GLYMA07G18200.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCAT TGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGATEST: gi|38192353|gb|CF921559.1|CF921559
genomic: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCATgtaagtatat ... tatttcttagTGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGAT
EST: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCAT TGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGATEST: gi|254330810|gb|GR842075.1|GR842075
genomic: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCATgtaagtatat ... tatttcttagTGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGAT
EST: CTATGGTCTGCTATTCAGAAAA-GGATAACTGGAGAGATGTTTGCTTCAT TGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGATEST: gi|38193612|gb|CF922818.1|CF922818
genomic: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCATgtaagtatat ... tatttcttagTGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGAT
EST: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCAT TGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGATEST: gi|38191127|gb|CF920333.1|CF920333
genomic: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCATgtaagtatat ... tatttcttagTGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGAT
EST: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCAT TGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGATEST: gi|254330811|gb|GR842076.1|GR842076
genomic: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCATgtaagtatat ... tatttcttagTGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGAT
EST: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCAT TGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGAT
genomic: CTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCATgtaagtatat ... tatttcttagTGATGGAATTCATCTTTCAACTGAGGGAAGCAAGATAGTAACAAAAGAGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGAAGCATGTTTGGAAGTGTGCCATGAGATGAATGTCAAGGCCATTGATCTATGGTCTGCTATTCAGAAAAAGGATAACTGGAGAGATGTTTGCTTCATgtaagtatatatgctcttatgtttcactcaattaaaaagctaaaggttcaaatttgcatattccattcagtttgattaggtggctaatttggtttttatttcttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG