Sequence
atgc intronic sequence ATGC exonic sequenceAGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAAGTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaatttcccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatctcacataattttctag
Basic information
species | Glycine max |
transcript | GLYMA07G18160.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G08930.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAAGTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTTGAGAAGgtaaacaacaaatattggtgatt----tatcatataaatttcccgaaacaggtgttagcttgggctttccatgtaataat-ttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatctcacataattttctag
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GGCAAGAGAACTAAAGAAAGCAGCTGATGGACTTCATCAGGAAGAAAGAAGTGGTGCTAAGGGCAGGAAATGGCGGAAAAATGTGAAAGCAGTTGAAAAGgtacctcatatatctcaaggttcagtatcttatctaaattttgtttcataagtagcaacttggaaagtttgcctattcatactggtcccttgtgtgtaaa--------------------------------------------------------------------------------------
upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G01460.1 (Arabidopsis thaliana), 5'ss of exon 6
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAAGTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaatttcccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatctcacataattttctag
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GGCAAGAGATCTAAAGAAAGCAGCTGATGCACTTCACCAGGAAGAACGAAGTGGTGCTAAGGGAAGGAAGTGGAGGAAAAATGTGAAAGCAGTTGAAAAGgtacaccatcatatctaagggtttggggtcttatttc----aaatctgttcca--------tgtctacaaaggtggctgatacct-ctgttgatattggttgctga---tgtgtag-----------------------------------------------------------------
upper sequence: GLYMA07G18160.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g02270.t01 (Vitis vinifera), 5'ss of exon 6
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAAGTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaatttc----ccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatctcacataattttctag
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GGCAAGAGACTTGAAGAAAGCGGCTGATGCGCTCCATCAGGAAGAAAGAAGTGGTTCCAAGGGTAGAAAGTGGCGTAAAAATGTGAAGGCAGTAGAGAAGgtatattttacct-ttgattactt-ttgtctaaagttcagatcacattcagtcatcagtttgg---ttaaatgcgtaaagtt--tgtttctcattcgagtatcagtt------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21678030|gb|BQ630381.1|BQ630381EST: GTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTTGAGAAG GAGTTGTTTCAATTAGAAGAAGATGTAAAGCTTCTTGAAGAGATGTATCCA
genomic: GTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTTGAGAAGgtaaacaaca ... aattttctagGAGTTGTTTCAATTAGAAGAAGATGTAAAGCTTCTTGAAGAGATGTATCCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGCAAGAGAACTAAAAAAAGCAGCTGAGGCACTACATCAGGAAGAAAGAAGTGGTTCAAAGGGTAGAAAGTTTCGTAAAAATGTGAAGGAAGTTGAGAAGgtaaacaacaaatattggtgatttatcatataaatttcccgaaacaggtgttagcttgggctttccatgtaataatttgatgcatgctgttatagtttgtggtagaaagtatacagttgctgaagtattcatagttgcgtgatagtagttatttactaatccatctcacataattttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA