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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCTTCTTTTCACAATTACCGTATTTGGTCTTTTCTGGGACTTGGAATGACCACTTACACTGCTTGGTACTTGGCAATAGCAGCCCTTATTCATGGCCAGgtaaatcgttaattctgaaccatccaattacaaattatacaaattattgttatataatttttaaagaaattatcataaatgtcaataaaattattatatt...

Basic information

species Glycine max
transcript GLYMA07G17810.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G17810.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g02030.t01 (Vitis vinifera), 5'ss of exon 5
ACCTTCTTTTCACAATTACCGTATTTGGTCTTTTCTGGGACTTGGAATGACCACTTACACTGCTTGGTACTTGGCAATAGCAGCCCTTATTCATGGCCAGgta--aatcgttaa---ttctgaaccatccaattacaaattatacaaattattgttatataatttttaaagaaattatc---ataaatgtcaataaaattattatatt------------------------------
||| || |||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||| || ||||| || ||||| || ||||||  | || | ||   |  | | |  || |      | || |   ||| | |||| |    || |       ||| ||   ||    || | |||| || || |                                 
ACCCTCCTTTCACAACTACCGTATTTGGTCTTTTCTGGGTCTTGGCATGACCACCTACACAGCATGGTACTTGGCCATCGCAGCTCTAATTCACGGACAGgtattactcatcaaccatcatcatctttctagggtttatttctctgaatcagtgtt-tgaggttatggtgctgattttctatattgcagtgagtaaagtt-ttgtgcgggtgtttttttttttttgttttttttatag

upper sequence: GLYMA07G17810.1 (Glycine max), 5'ss of exon 6
lower sequence: EFJ36050 (Selaginella moellendorffii), 5'ss of exon 4
ACCTTCTTTTCACAATTACCGTATTTGGTCTTTTCTGGGACTTGGAATGACCACTTACACTGCTTGGTACTTGGCAATAGCAGCCCTTATTCATGGCCAGgtaaatcgttaattctgaa-----ccatccaattacaaattatacaaattattgtta--tataatttttaaagaaattatcataaatgtcaataaaattattatatt-------------------------------------------------------
 || || || ||||| ||  | |||||||| || ||||| ||||||||||| |||||||| ||||||||| || ||||  | || ||  | |||||| |||| |       ||    ||     |||    || | ||  |   |   | |  |||   | ||    |  ||  |  | ||||  ||      | |  | ||| | |                                                       
TCCATCGTTCCACAACTATAGAATTTGGTCCTTCCTGGGGCTTGGAATGACAACTTACACGGCTTGGTACATGACAATCACTGCTCTCGTCCATGGCAAGgtgagagaagcatctaaaaaagctccactggatgataagcttgtctcgtcaaagtttgctgtagaactagaattatctttcatttatcatgggatagattttaaacttcttacataggcgtggtctaacatcaataattctcacacttcttcacttttgcag