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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGCAGAGAGAGCAGAAAGCCTTTTGCTTTCCTTGAAGCAGCGTTTTCCTGGTCTCCCTCAAACAGCCTTGGATATGAGCAAAATCCAATACAACAAGgtttgctttcattattgttagggtaaaacaccattttggtcttgaaaatgtaaagccattaagccttgaaatcaagaaaattcaaaataagttcctacaa...

Basic information

species Glycine max
transcript GLYMA07G16790.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G16790.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G02010.1 (Arabidopsis thaliana), 5'ss of exon 6
GTTTGCAGAGAGAGCAGAAAGCCTTTTGCTTTCCTTGAAGCAGCGTTTTCCTGGTCTCCCTCAAACAGCCTTGGATATGAGCAAAATCCAATACAACAAGgtttgctttcattattgttagggtaaaacaccattttggtcttgaaaatgtaaagccattaagccttgaaatcaagaaaattcaaaataagttcctacaa
  | || ||  |||| |||||  | |||||||| || || || || || || ||||| |||||||| ||  | || |||||||||||||||||||||||||||    | |||     | |      || | |||| |    |     |       | |   ||  ||    |        || |                
AATGGCGGATCGAGCTGAAAGTTTATTGCTTTCTTTAAAACAACGATTCCCAGGTCTTCCTCAAACCGCTCTAGACATGAGCAAAATCCAATACAACAAGgtta--ctacatggaaatcaaatcccaa-atcattctttcttcttgtaatccgctctaaacagttttcctttttctctgttttag---------------

upper sequence: GLYMA07G16790.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g01380.t01 (Vitis vinifera), 5'ss of exon 6
GTTTGCAGAGAGAGCAGAAAGCCTTTTGCTTTCCTTGAAGCAGCGTTTTCCTGGTCTCCCTCAAACAGCCTTGGATATGAGCAAAATCCAATACAACAAGgtttgctttcattattgttagggtaaaacaccattttggtcttgaaaatgtaaagccattaagccttgaaatcaagaaaattcaaaataagttcctacaa
| ||||||| |||||||||||||| |||| || | |||||||||| || ||||||||||| |||||| |||| |||||||||||||| || || |||||||||  |||| |     |  |  |   |      || |  | ||| |  |      | ||  |    | || | ||  ||||| || ||   ||       
GCTTGCAGAAAGAGCAGAAAGCCTCTTGCATTGCATGAAGCAGCGGTTCCCTGGTCTCCCACAAACAACCTTAGATATGAGCAAAATTCAGTATAACAAGgttcactttaa-----gccactgagtatttttgttctattattgcatttcattttctatctaatactcaa-ttaattaaatttaacatttatttag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193355177|gb|FK321750.1|FK321750
EST:     CTGGTCTCCCTCAAACAGCCTTGGATATGAGCAAAATCCAATACAACAAG                         GATATTGGGAAAGCCATTCTGGAGAGCTACTCTCGCGTGCTAGAGAGTTTG
genomic: CTGGTCTCCCTCAAACAGCCTTGGATATGAGCAAAATCCAATACAACAAGgtttgctttc ... tgttgtctagGATATTGGGAAAGCCATTCTGGAGAGCTACTCTCGCGTGCTAGAGAGTTTG