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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTACTATAATGATTCTGAGAATCTAGGGATAgttgcctcttgtggttacattatatagttttgtaggttcaatgaagtatgaagataaggatggtttttgatgtaaagcaagacacctgatgcatcatatttttaccaaag

Basic information

species Glycine max
transcript GLYMA07G16400.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G16400.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv08s0007g00930.t01 (Vitis vinifera), 5'ss of exon 5
------------------------------------------------------------------------------------------------------------------------TTTACTATA------ATGATTCTGAGAATCTAGGGATAgttgcctctt----gtggttacattatatagttttgtaggttcaatgaagtatgaagataaggatggtttttgatgtaaagcaagacacctgatgcatcatatttttaccaaag
                                                                                                                         | |||  |      |  |  |  ||  |  |||  |||     ||||    ||||||||| |||||||||||||||||    ||||||| |||| || ||| | | ||| |||||||||||||||||| ||  | || |  |||  ||   
GATGAAACTTTTTTGGCATCACCCTGTCTTGTAACTTTGGGTCCTGGAGTGAGGATATCCACCATTGCTGCTGGTGGGCGCCACACTTTAGCACTGTCAGgtaaattctccatcccctgggtcactgcagcccacacaagccacagttttcaggtgtagcaatttcttctttgtggttacactatatagttttgtaggtcatttgaagtacgaagctatggaagatctttaatgtaaagcaagacacctaatttaacaaaagttt--cag--