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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcacttctttcaatgtagcagtatatatttttgtgtgccgtgtaagtacatcagattaatatctctctgaatttcag

Basic information

species Glycine max
transcript GLYMA07G15170.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgc---------acttctttcaatgtagcagtatatatttttgtgtgccgtgtaagtacatcagattaatatctctctgaatttcag
|||||| || ||  | || || || || || ||||||||||| ||||| |||||||||||||| || |||||||  ||||||||||| || || ||||||||  |          | || | | | | ||  | |   ||||||    |   |   || ||   | |  || | | |||           
TGATATCCACAAAAGAGGTGGCACAGTTCTGGGAACATCACGGGGTGGTCATGACACCAAAAAAATTGTTGACAACATTCAAGATCGTGGTATTAATCAGgtaggtgttgtaactatttttcttagtataataatccttattttgaattttgggtaaaatatgcctgtgtactttgtctag---------

upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g44922.1 (Oryza sativa), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtc--tgcacttctttcaatgtagcagtatatatttttgtgtgccgtgtaagtacatcagattaatatctctctgaatttcag
||| || || ||| | || || || || ||||| |||||||||||||| ||||| || |||||||| |||||||  ||||| ||||| ||||| ||||||||   |||  || |||  |  ||   | |||||  | | | ||    || | |   |||  |   ||| |   | |    |||
TGACATCCACAAGAGGGGTGGGACAGTTCTTGGCACATCACGAGGTGGCCATGATACAAAAAAGATTGTTGACAACATTCAGGATCGTGGAATTAATCAGgtaaatgcggttgtttgcacctatgtg-atatagctct-tctgattggtcattgtctcatgtgcttatgtacatta--cccag

upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G879882_T03 (Zea mays), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcacttctt--tcaatgtagcagtatatatttttgtgtgccgtgtaagtacatcagattaatatctctctgaatttcag
|||||| || || || || || || || |||||||||||||||||||| ||||| ||||||||||| |||||||  ||||||||||| ||||| |||||||| ||  |||  |  | | |||  |  |  |||    |   |    || | ||  |  | ||     ||| |   |  |  ||
TGATATCCACAAACGAGGTGGTACAGTTCTTGGAACATCACGAGGTGGCCATGATACCAAAAAGATTGTTGACAACATTCAAGATCGTGGAATTAATCAGgtatgtgcttgctgattagtgtttctttgcataaccct---tattttggaggttgagtaaatgttcttctttaccacatctag

upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G004932_T01 (Zea mays), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcac---ttctttcaatgtagcagtatatatttttgtgtgccgtgtaagtacatcagattaatatctctctgaatttcag
||| || || ||  | || || || || |||||||||||||| ||||| ||||| ||||||||||| ||||| |  ||||||||||| |||||||| |||||   ||    | |    | ||    |  | |||  | |       |   ||||  |      || ||   | |   ||  |||
TGACATCCACAAAAGGGGTGGTACAGTTCTTGGAACATCACGCGGTGGCCATGATACCAAAAAGATTGTTGATAACATTCAAGATCGTGGAATCAACCAGgtaaacatgattgcacctattgatataacacataactcttctgattggagaagttgactgatatactagagcgccttatc-cag

upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtc--tgcacttctttcaatgtagcagtatatatttttgtgtgccgtgtaagtacatcagattaatatctctctgaatttcag------------------------------------------------------------------
||| || || ||  | || |||||||| || ||| |||| ||||| || |||||||||   ||||||||||||||||| |||||||| || || ||||||||   || |      | |   |   | | |  || ||| | |    | |   |   || |  |  ||| ||   | | |                                                                      
TGACATTCACAAAAGGGGTGGAACTGTTCTCGGATCATCTCGAGGAGGCCATGACACCGTGAAGATAGTTGACAGTATCCAAGATCGTGGCATAAATCAGgtaaatgaaacaaaataacaattatactcttaatctttttctcttttatgtatcactctgtct--tatttcctggcactgtgaagactcttttaccaaggtttgacacttaaactttcacattggtttaactctgattatttgtttcag

upper sequence: GLYMA07G15170.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTTGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgca----------cttctt--tcaatgtagcagtat-atatttttgt-gtgccgtgtaagtacatcagattaatatctctctgaatttcag--------------------------------
|||||| ||||| |||||||||||  | ||||| |||||||||||||| ||||| |||  ||||||||||||||||||||| ||||| ||||||||||||||||| |           |||||   |||  || | |  | | | ||| |  ||   |||||  | |  ||  |    |   ||||  | | ||                                 
TGATATTCATAAACGTGGGGGAACCATACTTGGGACATCACGAGGTGGCCATGATACCTCAAAGATAGTTGACAGTATTCAGGATCGTGGAATCAATCAGgtctgtagacaatactatttcttgtccaagttatctgagtcacactttcggagttttgtgtatttgctacacctgggcacacctcttcaatgcatggacgttagatttatagctttgttgatctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7591258|gb|AW706995.1|AW706995
EST:     ATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAG                         GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTT
genomic: ATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcactt ... tgaatttcagGTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTT