1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AAACAAAATTTCCCAGGAAAAGAAGGTGCTGGAAGTGCATGTTGAGAAGGGTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtttatagtttgtatgccatttgtcttgatacttcgtaaggattgcttgcaagtttataattttgaccttctaaaagttggtttcttaattaaatgcatgtgtacttgttgcag
species | Glycine max |
transcript | GLYMA07G14540.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|208303944|gb|GE105677.1|GE105677
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTT-GAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATEST: gi|298173661|gb|HO016997.1|HO016997
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGAT
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATAEST: gi|254327987|gb|GR834952.1|GR834952
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATA
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|33388612|gb|CA851819.1|CA851819
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|7925973|gb|AW831999.1|AW831999
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|22524464|gb|BU083275.1|BU083275
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: ATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|192328757|gb|FK022543.1|FK022543
genomic: ATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|298194584|gb|HO043056.1|HO043056
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|192319147|gb|FK010655.1|FK010655
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|58023827|gb|CX710568.1|CX710568
genomic: GAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGA-TGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|120491272|gb|EH219439.1|EH219439
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTTGTATTGGCA-GTNNAAG-ATEST: gi|13479325|gb|BG508668.1|BG508668
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTT-GTATTG-CAAGTA-AAGGAT
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|5770887|gb|AI974061.1|AI974061
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|298195828|gb|HO044219.1|HO044219
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|254327121|gb|GR836730.1|GR836730
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|19453018|gb|BM954428.1|BM954428
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|11687347|gb|BF594987.1|BF594987
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|207678496|gb|GD661034.1|GD661034
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTT-GAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTTATTGTCAAGTAAAEST: gi|22524662|gb|BU083473.1|BU083473
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGT-ATTG-CAAGTAAA
EST: ATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|208323895|gb|GE124398.1|GE124398
genomic: ATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|298179173|gb|HO027644.1|HO027644
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|298195498|gb|HO043889.1|HO043889
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|193680706|gb|FK624052.1|FK624052
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|298186346|gb|HO036979.1|HO036979
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCC CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|208324992|gb|GE124876.1|GE124876
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATEST: gi|208335448|gb|GE137509.1|GE137509
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGAT
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|192322850|gb|FK014781.1|FK014781
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAA-GGATCACEST: gi|18732460|gb|BM527057.1|BM527057
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|254327988|gb|GR834953.1|GR834953
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT -CTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|208315209|gb|GE116113.1|GE116113
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|6724797|gb|AW309196.1|AW309196
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|26058372|gb|CA801286.1|CA801286
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|193500227|gb|FK465256.1|FK465256
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCACEST: gi|208159029|gb|GD951754.1|GD951754
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATEST: gi|16996472|gb|BM085844.1|BM085844
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGAT
EST: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCT CCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
genomic: GTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtt ... cttgttgcagCCTGACACAATCACAGGAGATATTGTTTTTGTATTGCAAGTAAAGGATCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACAAAATTTCCCAGGAAAAGAAGGTGCTGGAAGTGCATGTTGAGAAGGGTATGCAGCAGGGTCAGAAGATTGTTTTTGAAGGACAAGCTGATGAAGCTgtaagtggtttatagtttgtatgccatttgtcttgatacttcgtaaggattgcttgcaagtttataattttgaccttctaaaagttggtttcttaattaaatgcatgtgtacttgttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC