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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACTATTCACTGACATGAATGCTTATGAGgtaagggactttaaatatttattttataggtgttatgtatctaatagtattcaaagttgtaaatctattaaaagtttttggtgaattaatcactgaccaa...

Basic information

species Glycine max
transcript GLYMA07G12980.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31457646|gb|CD399674.1|CD399674
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31462596|gb|CD404624.1|CD404624
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31306116|gb|CD391319.1|CD391319
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCCAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|298171825|gb|HO021417.1|HO021417
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31457042|gb|CD399070.1|CD399070
EST:     GTACTATTTACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31457464|gb|CD399492.1|CD399492
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|7796078|gb|AW781475.1|AW781475
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|208087792|gb|GD888596.1|GD888596
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|192331548|gb|FK023424.1|FK023424
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|22927863|gb|BU545002.1|BU545002
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|7686605|gb|AW757253.1|AW757253
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31467620|gb|CD409648.1|CD409648
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|15662434|gb|BI699805.1|BI699805
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31474830|gb|CD416858.1|CD416858
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|208280548|gb|GE080928.1|GE080928
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGAT
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGAT
EST: gi|57575286|gb|CX548261.1|CX548261
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31465644|gb|CD407672.1|CD407672
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|298183238|gb|HO028223.1|HO028223
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|12691356|gb|BG157692.1|BG157692
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATNTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|151401940|gb|EV271753.1|EV271753
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31463797|gb|CD405825.1|CD405825
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|192331547|gb|FK023423.1|FK023423
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31469331|gb|CD411359.1|CD411359
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|20448813|gb|BQ252937.1|BQ252937
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|26059701|gb|CA802615.1|CA802615
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|20811574|gb|BQ296052.1|BQ296052
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|192321257|gb|FK014347.1|FK014347
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|10848296|gb|BF070817.1|BF070817
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCACAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|13788822|gb|BG651413.1|BG651413
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|27445924|gb|CA953047.1|CA953047
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|192314355|gb|FK008381.1|FK008381
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|7692141|gb|AW760255.1|AW760255
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAGGC-AGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31471469|gb|CD413497.1|CD413497
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31460814|gb|CD402842.1|CD402842
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|192298638|gb|FG990949.1|FG990949
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|209700427|gb|BW664427.1|BW664427
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31469168|gb|CD411196.1|CD411196
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|10844859|gb|BF068055.1|BF068055
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAA
EST: gi|13789520|gb|BG652111.1|BG652111
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGTTTTTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|7639234|gb|AW733561.1|AW733561
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31475239|gb|CD417267.1|CD417267
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31456084|gb|CD398112.1|CD398112
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCCAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|31467937|gb|CD409965.1|CD409965
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|8827741|gb|BE211471.1|BE211471
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|19271181|gb|BM887437.1|BM887437
EST:     GGACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|12690107|gb|BG156443.1|BG156443
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAAAACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
EST: gi|7284797|gb|AW597222.1|AW597222
EST:     GTACTATTCACTGACATGAATGCTTATGAG                         GTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA
genomic: GTACTATTCACTGACATGAATGCTTATGAGgtaagggact ... aatttatcagGTGGATTTGGGGACTGATGCAAAACACTGCTTCTGTAAAGCAAGTGACTTA