Sequence
atgc intronic sequence ATGC exonic sequenceTAATGTTGACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGAGATAAGACCAATGACAAACCACCAAGAGCCAAGCCGgtaagatgtctcttgtctccttttagattcactgttttgaagtttatatttcagtttgttacaatttcaatttcaattttcatgctacgtttttactttggagttgcttgaatgtatcagctaaatctaacattcttgtctcttttcatatgttgcatgttttacag
Basic information
species | Glycine max |
transcript | GLYMA07G09750.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G09750.2 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g11820.1 (Oryza sativa), 5'ss of exon 6
TAATGTTGACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGAGATAAGACCAATGACAAACCACCAAGAGCCAAGCCGgtaagatgtctcttgtctccttttagattcactgttttgaagtttatatttcagtttgttacaa-tttcaatttcaattttcatgctacgtttttactttggagttgcttgaatgtatcagctaaatctaacattcttgtctcttttcatatgttgcatgttttacag
||||| || | | | ||||||||||||||||||||||||| | |||| ||| ||||| | | || ||||| || | ||| || | |||| | | || | | ||||| |||| ||| | ||||| || || | ||| | | | | | |||| || | || | || ||| || | ||
TAATGCGGATAAATTGAGGAACTTTATTAAGCATGTTTATGTGGAACGGAGATACACAGGAGAAAGAAGTGCAGATCGGCCACCGAGGGGAAAG-
upper sequence: GLYMA07G09750.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g04210.t01 (Vitis vinifera), 5'ss of exon 5
TAATGTTGACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGAGATAAGACCAATGACAAACCACCAAGAGCCAAGCCGgtaagatgtctcttgtctccttttagattcactgttttgaagtttatatttcagtttgttacaatttcaatttcaattttcatgctacgtttttactttggagttgcttgaatgtatcagctaaatctaacattcttgtctcttttcatatgttgcatgttttacag
|||| |||| || || || ||||| || ||||||||||||||||||||||||| | ||| || | | | ||||||||||||||| | ||| ||||||| || | ||| | |||| || | | | || || |||| |||| || | | | || ||| |
TAATATTGAGAGACTTCGGGACTTCATCAAGCATGTTTATGTGGATAGAAGATATAGTGGTGAGAGAAGCTTTGACAAACCACCAAGGGTGAAGATGgtaaga--tccagcaaccacttcccaaagagaaacagtgaacattttctct---ttccttgagattttgatttgaagaattttagagaaaatgcaccttgtctat--------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209722104|gb|BW659319.1|BW659319EST: GAAGATTCACTGGAGATAAGACCAATGACAAACCACCAAGAGCCAAGCCG GGTGACAAGGATGATTTTTATCAAGGAGGATCTAGAAGCCCTCCCTATG
genomic: GAAGATTCACTGGAGATAAGACCAATGACAAACCACCAAGAGCCAAGCCGgtaagatgtc ... tgttttacagGGTGACAAGGATGATTTTTATCAAGGAGGATCTAGAAGCCCTCCCTATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAATGTTGACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGAAGATTCACTGGAGATAAGACCAATGACAAACCACCAAGAGCCAAGCCGgtaagatgtctcttgtctccttttagattcactgttttgaagtttatatttcagtttgttacaatttcaatttcaattttcatgctacgtttttactttggagttgcttgaatgtatcagctaaatctaacattcttgtctcttttcatatgttgcatgttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT