Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgcttttcattggatccatttaaaagggtttagggattttgcattctcagagaagccaccagttaaacttacatttcttttattaaatgaaaaaaaa...

Basic information

species Glycine max
transcript GLYMA07G09180.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G09180.3 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g03560.t01 (Vitis vinifera), 5'ss of exon 7
GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgcttttcattggatccatt------taaaagggtttagggat-tttgcattctcagagaagccaccagttaaacttacatttcttttattaaatgaaaaaaaa
|||||||| |||| || ||||||||| ||||||||||| || ||||||||||||  |||||||| |||       ||| | |||||| ||   |||||||     | |||| |||| ||  |||      |||||||  |||    ||    
GTTCAAGGGGAGAGGAATTGTATATTTCCTGAAGACCCTGGCCAGgtatgcttt--attggatctattgctcttcaaaggcgtttagagaagcttgcattt--gaaaaagctaccaattctactgcttgctcttttagaaaaaaggaag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13312217|gb|BG405798.1|BG405798
EST:     GTTCAAGGAGAGAAGAGTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|120493761|gb|EH221928.1|EH221928
EST:     GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|120493651|gb|EH221818.1|EH221818
EST:     GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|7685006|gb|AW755654.1|AW755654
EST:     GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|19348059|gb|BM892591.1|BM892591
EST:     GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|192312979|gb|FK004625.1|FK004625
EST:     GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|16345287|gb|BI970882.1|BI970882
EST:     ATTCTGTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: ATTCTGTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|31464669|gb|CD406682.1|CD406682
EST:     GTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|4287805|gb|AI441242.1|AI441242
EST:     GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|23053843|gb|BU577597.1|BU577597
EST:     GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|192312980|gb|FK004626.1|FK004626
EST:     GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|31463138|gb|CD405166.1|CD405166
EST:     GTTCAAGGAGAGAAGAGATGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|21677113|gb|BQ629464.1|BQ629464
EST:     GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|192301762|gb|FG997662.1|FG997662
EST:     ATTCTGTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: ATTCTGTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
EST: gi|19348345|gb|BM892877.1|BM892877
EST:     G---A-G-AGA-A-GACTTGTATATTCCCTGAAGACCCCGGTCAG                         CTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG
genomic: GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgctttt ... tctggtgtagCTGCTGGATGAAAACTGCTTGAAGAGGAAAGCAGCTGGAGAGCCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTCAAGGAGAGAAGACTTGTATATTCCCTGAAGACCCCGGTCAGgtatgcttttcattggatccatttaaaagggtttagggattttgcattctcagagaagccaccagttaaacttacatttcttttattaaatgaaaaaaaa

- - AAGGAG
- -  AGGAGA
- - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - -  TGAAGA