Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGATTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGGTTTGGTTTCGATGTTGATAACACCATTGGGAGgtttaatgcgccttcctcatgaaagttatcattgttgtaatttgtttttgttatcatttatcatgaatctttccattttaacaag

Basic information

species Glycine max
transcript GLYMA07G08570.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08570.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G030299_T02 (Zea mays), 5'ss of exon 5
TCTGATTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGGTTTGGTTTCGATGTTGATAACACCATTGGGAGgtttaatgcgccttcctcatgaaagttatcattg-ttgtaatttgtt---tttgttat--catttatcatg-aatctttccattttaacaag-------------
|| ||||| || ||||||||||||||||||||||| ||||  ||||||  |||||| | |||||||   ||||| || || ||||| ||||  | |    ||||   ||||||  |  | ||  |||   ||| |    | || |||  || |   ||   | |||  |   |  | | |              
TCAGATTTGGGAAGGAAGCTTGCTGAAATGCATAAGGCTGCTAAATCTGATAAAGGATATGGTTTCCCGGTTGACAATACTATTGGAAGgt--agtatcacttcg--atgaaatatggccttaattgaggtttatcgggtctgctatgtcagtctccacatagtctccctgatccacctattatgttattgcag

upper sequence: GLYMA07G08570.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0048g01810.t01 (Vitis vinifera), 5'ss of exon 5
TCTGATTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTAGTAAAGGGTTTGGTTTCGATGTTGATAACACCATTGGGAGgtttaatgcgccttcctcatgaaagttatcattgttgtaatttgtttttgttatca---------tttatcatgaatctttccattttaacaag--------
 ||| |||||||||||||||||||||||||||||||||||||||||||   ||||| ||||| || ||||||||||| ||||| || |||| | ||     |   ||||    ||  ||||        ||||| | |||    |         || ||   |||  ||| | || |  |  |        
GCTGTTTTAGGGAGGAAGCTTGCTGAAATGCATAAAGCTGGAAAATCTGAAAAAGGATTTGGGTTTGATGTTGATAATACCATAGGCAGgtatcatc--tttaaatcatcgttgtcgtcatc-ccactctttgtctctgtggaaaggcagtaagttcattgagaaaattttctttatgtcttgctttgcag