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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATGTCGTGCGTTAAATTATTTACATCAAGTGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTGgtaagattcttttgaacagttcagcctgaatgctttaagttacatgctaacactcaagattttccctttggatgctgcaattgatcagaatgatctatgc...

Basic information

species Glycine max
transcript GLYMA07G08320.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G08320.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S74_168V6.1 (Physcomitrella patens), 5'ss of exon 4
-------------------------ATATGTCGTGCGTTAAATTATTTACATCAAGTGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTGgtaag---attcttttgaaca---gttcagcctgaatgctttaa-----gttacatgctaacactcaagattttccctttggatgctgcaattgatcagaatgatctatgc----------------------------------------------------------------
                         ||||| ||  || |    ||  | |||   |  |||||||| ||||| ||||||||||| |||||||||||  |||||||   || ||  || | |   | |   | | |   | |  |        | |   || |||  |  | | |    |     |      |  || ||    |  | | |                                                                
ATATGTGAAACTGTACACTTATCAGATATGCCGGTCGCTGGCATACATTCATAGTGGCATTGGTGTGTGTCACCGTGACATCAAGCCCCAGAACCTGCTGgtaagtgaatgctggtgtatatgtgatggacttaagcacatggatggtgagcatagtttagcaccgacaactattatgtcaccggagtttgtgaataagggccagatgtacgagcgtcaaggagttgtgagtgtatggaagtatgatgatgacgaggccggtttgtgcactgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17963611|gb|BM270358.1|BM270358
EST:     ATCAAGTGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTG                         GTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAG
genomic: ATCAAGTGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTGgtaagattct ... catatgatagGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAG
EST: gi|208275795|gb|GE074257.1|GE074257
EST:     TGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTG                         GTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAG
genomic: TGATTGGTGTTTGTCATCGTGACATCAAACCCCAGAACCTATTGgtaagattct ... catatgatagGTAAATCCGCAGACACATCAGTTAAAGATATGTGATTTTGGGAGCGCAAAG