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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCTAGGCTTTCAAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTTAGAACTGgtatgccatataacagattttttgttagttttgtccttctttcttatgttcaacactaatattcaattgaaaatctgtattgcatttaaattttttacaatcatttatgttttagtagagtggagtgatacatggtttcttatttctctttgtttttttgtag

Basic information

species Glycine max
transcript GLYMA07G07850.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G382104_T02 (Zea mays), 5'ss of exon 6
AATCCTAGGCTTTCAAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTTAGAACTGgtatgccatataacagattttttgttagttttgtccttctttcttatgttcaacactaatattcaattgaaaatctgtattgcatttaaattttttacaatcatttatgttttagtagagtggagtgatacatggtttcttatttctctttgtttttttgtag
|| ||||| |||||  |||| ||||| ||||| || ||| ||||||| |||||||| || || |||||||||||||| |||||||| ||  | || ||||||  |     |      | |||  | |    | ||||  ||| ||  ||       |||| ||   ||||     |  ||| |   | ||||| | |  | |                                                             
AACCCTAGACTTTCCTGTTTCGGTCTCATGAAGAACAGCCGGGATGGAAAAAGTTACAGTACCAATTTGGCATTTACGCCTCCAGAATACATGAGGACTGgtgggtttcttgtttcttctttaatga--cctatcctagtttgtttagtagccatttaatgttagtttgatctgata-attactgctgaatttctgaggaact------------------------------------------------------------

upper sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 6
lower sequence: AT1G01740.1 (Arabidopsis thaliana), 5'ss of exon 6
AATCCTAGGCTTTCAAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTTAGAACTGgt-atgccatataacagattttttgttagttttgtccttctttcttatgttcaacact-aatattcaattgaaaatctgtattgcatttaaattttttacaatcatttatgttttagtagagtggagtgatacatggtttcttatttctctttgtttttttgtag
||||| || |||||||  |||||  | ||||| |||||  |||||||||||||||||||||||||| | || |||||||| || ||||||||  |||||||| |       |  ||   |  | ||  ||  | |  ||       || |  |  |||  | | | || ||    |   ||  |                                                                                 
AATCCAAGACTTTCAACATTTGGGTTAATGAAGAATAGTCGGGATGGGAAAAGTTATAGCACAAATCTTGCTTTTACCCCACCTGAGTATCTACGAACTGgtgaaattgatttgcaccctcctcgtaggtcatattatttccaacaatttctacaacttgagacttaagtgtgtgttgatacag---------------------------------------------------------------------------------

upper sequence: GLYMA07G07850.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 6
AATCCTAGGCTTTCAAGTTTTGGTCTTATGAAAAATAGCAGGGATGGGAAAAGTTATAGCACAAATTTGGCATTTACCCCTCCAGAGTATCTTAGAACTGgtatgccatataacagattttttgttagttttgtccttctttcttatgttcaacactaatattcaattgaaaatctgtattgcatttaaattttttacaatcatttatgttttagtagagtggagtgatacatggtttcttatttctctttgtttttttgtag
|||||||| || ||  | ||||| || ||||||||||| |||||||| ||||||||||| || ||| |||| ||||| ||||| |||||| | ||||||||||||           |  | || ||    |  |  ||   | ||||||  || |    ||||   || ||  |   |||      || || | || ||||  |  || |    | | ||||                                         
AATCCTAGACTCTCTTGCTTTGGCCTGATGAAAAATAGTAGGGATGGAAAAAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTGgtatgt----------acctcttattgaaataat--tttaattttatgtcaaaaa---gtatttgttttaaggttcctatg-----tatatatcttgcaat--tcaatttgagggaaaagtg-----------------------------------------