Sequence
atgc intronic sequence ATGC exonic sequenceGTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGAACGGAGGAGACACATTCACAGgtaattgtttataattcatgctaaataactaacaaggtgttttcatgtgtatatgcatacgtgaggtaatgaatatgcattcgcatgtaccagcgtatactgccttttgtgatatttattcatgggactttggatcatttcag
Basic information
species | Glycine max |
transcript | GLYMA07G06240.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G06240.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G041732_T01 (Zea mays), 5'ss of exon 6
GTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGAACGGAGGAGACACATTCACAGgtaattgtttataattcatgctaaataactaacaaggtgttttcatgtgtatatgcatacgtgaggtaatgaatatgcattcgcatgtaccagcgtatactgccttttgtgatatttattcatgggactttggatcatttcag
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GTTCGTCAAGTATGTCATATTGCCATGAAAAGAGATCTTGAATTCGTCAACACTGTTCAAGAAGGAAGTGAGGAAACACACTCTCAGgta----tttactatttag--tagatcaaatatattttgattgcttcttttca---aaatcaaaggtggtgcttatg-attaccatat-tcag--------------------------------------------------
upper sequence: GLYMA07G06240.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g01010.t01 (Vitis vinifera), 5'ss of exon 7
GTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGAACGGAGGAGACACATTCACAGgta-attgtttataattcatgctaaataactaacaaggtgttttcatgtgtatatgc-atacgtgaggtaatgaatatgcattcgcatg-taccagcgtatactgccttttgtgatatttattcatgggactttggatcatttcag
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GTTCGTCAAATCTGTCATATTGCTTTGAAAAGAGATCATGAGTTTATCAATACAGTTCAAGAGGGTAGTGAAGAGACACACTCACAGgtagatcacttatcaactgtatttgttgtgtc----gtttttgtactctttaaattctattagtatctcaattcttaagattttacatgatttcag--------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|298171162|gb|HO016194.1|HO016194EST: GAGGAGACACATTCACAG GTCTGCCAGACGCATTTAGTTGCCCCATTGGACAAGCATTTCTCTTTACTA
genomic: GAGGAGACACATTCACAGgtaattgttt ... atcatttcagGTCTGCCAGACGCATTTAGTTGCCCCATTGGACAAGCATTTCTCTTTACTA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTCCGTCAAGTATGTCATATTGCTTTGAGAAGGGATCATGAATTTATCAATACAGTTCAAGAGGGAACGGAGGAGACACATTCACAGgtaattgtttataattcatgctaaataactaacaaggtgttttcatgtgtatatgcatacgtgaggtaatgaatatgcattcgcatgtaccagcgtatactgccttttgtgatatttattcatgggactttggatcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA