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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTGACTCCATGGGTTGTGGTTTATCAAGTTGTCATGTAGTTAATGGAGTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactttctctatttcacataattcctttatgttactcataggggacaatattacaattaagattgtctgtagatggtcttgcatggctagctttt...

Basic information

species Glycine max
transcript GLYMA07G06230.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G06230.2 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g00990.t01 (Vitis vinifera), 5'ss of exon 6
ATATTGACTCCATGGGTTGTGGTTTATCAAGTTGTCATGTAGTTAATGGAGTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactttctctatttcacataattcctttatgttactca-taggggacaatattacaattaagattgtct------gtagatggtcttgcatggctagctttt
||||||| ||||||||||||||  |||| || |||||||| || ||||||||||||||  ||||||| || ||||| || ||||||||||| |||||||||| || |  || || || |       ||    ||||||| | | |     |   | || |  | |  ||||| |       ||  | ||  ||||| |  ||     
ATATTGATTCCATGGGTTGTGGAATATCCAGCTGTCATGTTGTAAATGGAGTCCCTGCACCAGGCAATTTCCACCCTATGCGGATGAATTCCGGAAATGAgtaagaaaattttccatcttgacc--ttagggtatgttaataagtgctccagttttttgccctaaccattgtgttataagataactagtggtgcatagagag-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401879|gb|BM178661.1|BM178661
EST:     GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGA                         TATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
genomic: GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactt ... cttgttgaagTATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
EST: gi|120497096|gb|EH225263.1|EH225263
EST:     GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGA                         TATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
genomic: GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactt ... cttgttgaagTATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
EST: gi|9204008|gb|BE330232.1|BE330232
EST:     GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGA                         TATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
genomic: GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactt ... cttgttgaagTATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
EST: gi|308222668|gb|HO760643.1|HO760643
EST:     GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGA                         TATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
genomic: GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactt ... cttgttgaagTATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
EST: gi|302141431|gb|HO212307.1|HO212307
EST:     GTCCCTGCCTCAGGCAACTTTCACCTCATTCGGATGAATTCTGGAAATGA                         TATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
genomic: GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactt ... cttgttgaagTATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
EST: gi|120495877|gb|EH224044.1|EH224044
EST:     GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGA                         TATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
genomic: GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactt ... cttgttgaagTATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
EST: gi|19452386|gb|BM953796.1|BM953796
EST:     GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGA                         TATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA
genomic: GTCCCTGCCTCAGGCAACTTTCACCCCATTCGGATGAATTCTGGAAATGAgtgagtactt ... cttgttgaagTATGATGATGGACCACAGCGCTCCTGATATGGTTCCTGTTATACCACCAAA