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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCAGTTCTTCCTGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctcttggctctttagctgataaaaaaattgaaattttgttccaaccatttaaacaataacaagcttgtccaattgtgacacag

Basic information

species Glycine max
transcript GLYMA07G05390.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g36260.1 (Oryza sativa), 5'ss of exon 4
GAGCCAGTTCTTCCTGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgta------------tattc-tcttggctc--tttagctgataaaaaaattgaaattttgttccaaccatttaaa---caataacaagcttgtccaattgtgacacag-------------------
|| ||||||||||||||||  ||||| |||||||||||||||||  | |||||||||||||||||||||             |||| |||  |||   |  | ||     |   |   |||  |   |     |||||||    |   |||||||||   |        ||                      
GAACCAGTTCTTCCTGGTTCATTCCTCCGAGCCAGGGCCATTGGTCTCATGCCTATGATTGACCAGgtaagtaaatcaatccattcatctctgctaagtcaaactttattagggagaaaaaaataacttttgtcatttaagtatcggcaacaagcttacactgcacctgcatttttttccgtttcatgaacag

upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G01050.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGCCAGTTCTTCCTGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattct---cttggctctttagctgataaaaaaattgaaattt--tgttccaaccatttaaa-caat---aacaagcttgt---ccaat--tgtgacacag---------------
|| || || ||||| |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||| |  ||   ||||     | |   ||        ||    | |  |  || || | ||||   || |   ||    |||||   |||||  |||      |               
GAACCTGTGCTTCCGGGTTGTTTTCTGCGTGCCAGAGCCATTGGATTAATGCCTATGATTGACCAGgtaaaacctaaacttgatcaatgaaaagactctgttttttttttctcttactctaatcctttaggtcagtttaaatggtcttgtactccaatcttgtatttttggcgctgtaattttag

upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 6
lower sequence: AT4G01480.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGCCAGTTCTTCCTGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgta-tattct----cttggctctttagctgataaaaaaattgaaattttgttccaaccatt-taaacaataacaagcttgtccaattgtgacacag
||||| || ||||| |||||||| || || ||| | || ||||| || |||||||||||||||||||||  || ||     || | | || |  |          || || |||   |  ||||||| ||   |||     |    |    |||  | | ||
GAGCCTGTGCTTCCGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGgtaacatcctaagctttagtttttcatgtttccttgtgcttcaagtttg--tgtaaccattgtagctaattctttggggttttggttgaaataaag

upper sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv02s0025g02980.t01 (Vitis vinifera), 5'ss of exon 5
GAGCCAGTTCTTCCTGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctcttggctctttagctgataaaaaaattgaaattttgttccaaccatttaaacaataacaagctt-gtccaattgtgacacag-
|| |||||| ||||||| ||||| || |||||||||||||||||  ||||||| |||||||| |||||    ||  ||  ||||  |||  || |   ||     | ||  |  ||   | || |   |||  ||  |  || |  |  | | ||   
GAACCAGTTGTTCCTGGCTGTTTTCTTCGAGCCAGGGCCATTGGGCTGATGCCCATGATTGATCAGgtgatgtcattt--ctctcaagcaaatcatgcaaccattagttcttcacagtgagttgaggcatatgaaattcagttctttattcataccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254315135|gb|GR830128.1|GR830128
EST:     GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAG                         GGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
genomic: GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctc ... tgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
EST: gi|254344222|gb|GR851025.1|GR851025
EST:     GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAG                         GGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
genomic: GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctc ... tgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
EST: gi|17400209|gb|BM176991.1|BM176991
EST:     GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAG                         GGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
genomic: GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctc ... tgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
EST: gi|254315134|gb|GR830127.1|GR830127
EST:     GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAG                         GGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
genomic: GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctc ... tgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
EST: gi|254344223|gb|GR851026.1|GR851026
EST:     GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAG                         GGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
genomic: GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctc ... tgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
EST: gi|18040990|gb|BM309284.1|BM309284
EST:     GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAG                         GGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
genomic: GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctc ... tgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
EST: gi|209698574|gb|BW652427.1|BW652427
EST:     GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAG                         GGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
genomic: GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctc ... tgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
EST: gi|151399288|gb|EV269159.1|EV269159
EST:     GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAG                         GGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
genomic: GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctc ... tgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
EST: gi|21995190|gb|BQ786718.1|BQ786718
EST:     GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAG                         GGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT
genomic: GTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgtatattctc ... tgtgacacagGGGGAGAAGGATGATAAAATTATTGCAGTATGTGCTGATGATCCAGAATAT