Sequence
atgc intronic sequence ATGC exonic sequenceATGGAATTCAATAGCAGTCCAGGCGACCTGATGGAGCTTTCACCTCTTTTTTCTGATGATAGCCGTGTTGCTGAGGCTGCTTCGATTGCCCAGAAATTACgtaagaattaagatgcgttttgaattttttacaatgctttaaccaaattctgtcaatgctatgctaattcttttaattttcag
Basic information
species | Glycine max |
transcript | GLYMA07G05160.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G05160.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os12g13590.1 (Oryza sativa), 5'ss of exon 6
ATGGAATTCAATAGCAGTCCAGGCGACCTGATGGAGCTTTCACCTCTTTTTTCTGATGATAGCCGTGTTGCTGAGGCTGCTTCGATTGCCCAGAAATTACgtaag-----aattaagatgcgttttgaattttttacaatgctttaaccaaattctgtcaatgctatgctaattcttttaattttcag----------------
||||| ||||| |||| ||||| || || ||||| ||||| ||| | ||||||||||| || |||||||||||||| ||||| ||||| |||||||| |||||| || || | | | |||||| |||| | |||||| | | | |||||||| || | |
ATGGAGTTCAACAGCACACCAGGGGATCTTATGGAACTTTCTCCTTTATTTTCTGATGACAGTCGTGTTGCTGAGGCAGCTTCAATTGCACAGAAATTGCgtaagctcacaacatttttgtctcacgggatcaacacaatg-tttagcagttttctgttg-caccttac--attcttttcatatccctgttactgcgtctgtgt
upper sequence: GLYMA07G05160.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G12370.1 (Arabidopsis thaliana), 5'ss of exon 7
ATGGAATTCAATAGCAGTCCAGGCGACCTGATGGAGCTTTCACCTCTTTTTTCTGATGATAGCCGTGTTGCTGAGGCTGCTTCGATTGCCCAGAAATTACgtaagaattaaga----tgcgtt--ttgaatttt--ttacaatgctttaaccaaattctgtcaatgctatgctaattcttttaattttcag----------------------------------------------------------------------------------------------------
||||| ||||| |||| ||||| || || ||||||||||| || | ||||||||||||||||| || |||||||||||||| || || ||||||||||||| || | | | | ||| ||||| ||| | | || | ||| | || | || || | || ||| | | ||| |
ATGGAGTTCAACGGCAGCCCAGGGGATCTTATGGAGCTTTCCGCTTTGTTTTCTGATGATAGCCGCGTAGCTGAGGCTGCTTCTATCGCTCAGAAATTACgtatgatgtgatagctttatgttacttgaaatttgtctggagtgttagaacaactttttatctatcatttgttaacaactaagaatttaactctccaacaacgaaactttactaaaaccaaaaagaaacaatgaaaatttacagttaaattaggctgcaattgatttccatgctctccttgtcgatatcag
upper sequence: GLYMA07G05160.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv15s0046g02200.t01 (Vitis vinifera), 5'ss of exon 6
ATGGAATTCAATAGCAGTCCAGGCGACCTGATGGAGCTTTCACCTCTTTTTTCTGATGATAGCCGTGTTGCTGAGGCTGCTTCGATTGCCCAGAAATTACgtaagaatt-aagatgcgttttgaattttttacaatgctttaaccaaatt--------ctgtcaatgctatgctaattct------tttaattttcag--
||||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||| || || |||||||| ||||||| || ||||| || | || | | | | || ||| | ||| ||||||| | ||||| ||| |
ATGGAGTTCAATAGCAGCCCAGGCGACCTGATGGAACTTTCACCTCTATTTTCTGATGATAGTCGTGTTGCTGAGGCTGCTTCAATCGCACAGAAATTGCgtaagatttcaagatctattaattgtccatttccactggctgaacatattgttttgcaccatcagaatgatgctaaattcaaactctttaactttttgtaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254329452|gb|GR839015.1|GR839015EST: TTCTGATGATAGCCGTGTTGCTGAGGCTGCTTCGATTGCCCAGAAATTAC GGTCATTTGCTGAAGAAGATATCGGAAGACATGGAATACCTGTCCCATCAG
genomic: TTCTGATGATAGCCGTGTTGCTGAGGCTGCTTCGATTGCCCAGAAATTACgtaagaatta ... taattttcagGGTCATTTGCTGAAGAAGATATCGGAAGACATGGAATACCTGTCCCATCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATGGAATTCAATAGCAGTCCAGGCGACCTGATGGAGCTTTCACCTCTTTTTTCTGATGATAGCCGTGTTGCTGAGGCTGCTTCGATTGCCCAGAAATTACgtaagaattaagatgcgttttgaattttttacaatgctttaaccaaattctgtcaatgctatgctaattcttttaattttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT