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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAACTGTATGTGAGAGGTCTCATCTCTTTCGCATTAAATACTATGGCAGCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaattgtctgttctaggaataaatatgtctttgttatttgaactatggcagtagtttttacagttgttgtcattattactgttcag

Basic information

species Glycine max
transcript GLYMA07G05100.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G05100.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 6
GGGAACTGTATGTGAGAGGTCTCATCTCTTTCGCATTAAATACTATGGCAGCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaa------ttgtctgttctaggaataaatatgtctttgttatttgaactatggcagtagtt-----tttacagttgttgtcattattactgttcag
 |||||||| ||||| ||||||||||||||||| || ||||||||||| || ||||||||||| ||||| || ||  || | || ||||| || |||||||| |      || | | || |     |  ||| | | |   ||||  | ||     | || ||       || |    |  |||  | |  | |||||
AGGAACTGTGTGTGAAAGGTCTCATCTCTTTCGGATAAAATACTATGGTAGTTTTGATAAACCCTTGGGACGGTTCTTGAGAGATCATTTGTTCGATCAGgtgagttattttcttttttgttttgttttataagacatctatattacagcttcaataataattagaaacctaaatgcatgctcaaaact--ttttcag

upper sequence: GLYMA07G05100.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 7
GGGAACTGTATGTGAGAGGTCTCATCTCTTTCGCATTAAATACTATGGCAGCTTTGATAAACCATTGGGTCGATTTCTGCGGGACCATTTATTTGATCAGgtaat-tgtctgttctaggaataaatatgtctttgttatttgaactatggcagtagtttttacagttgttgtcattattactgttcag
||| ||||| ||||| ||||| |||||||||||||| ||||||||||||| |||||||||||| ||||| || ||||| || ||||||||||||||||||||||  | ||||||      ||   | |  || | | | |  ||   ||  |  | | | ||    ||  |      ||  | | |||
GGGGACTGTCTGTGAAAGGTCCCATCTCTTTCGCATCAAATACTATGGCAACTTTGATAAACCTTTGGGGCGGTTTCTACGAGACCATTTATTTGATCAGgtaaggtttctgtttctcacat---tttcactctctcaataaaaacttg-taacattctgtaagactgaggaagcctttgttat-cag