Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCACTACAATATATTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCgtaagtttcactctcatgatttcttagtaaaacagtcgcctctttctttatttgtagtttcggacttgaatcaatctctgttcatccaaaatggaaaaaaaaattgtactgtctcaaaggatagttgtacggtatgttctttgcaattatgttggtaacttagattggctcatcatatttattttttctggcggctccag

Basic information

species Glycine max
transcript GLYMA07G04640.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G17370.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCACTACAATATATTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCgtaagtttcactctcatgatttcttagtaaaacagtcgcctctttctttatttgtagtttcggacttgaatcaa-tctctgttcatccaaaatggaaaaaaaaattgtactgtctcaaaggatagttgtacggtatgttctttgcaattatgttggtaacttagattggctcatcatatttattttttctggcggctccag
|||||| ||||||||||||||| ||| | ||||| |||||||||||||| | | ||||| | ||||| |||||||| || | ||| ||||||||||   |   |  ||  || || |         | | | |    | | | |||||  || ||| |  || |||     ||      || | |   |                                                                                                    
GTCACTTCAATATATTTGTTGGGGATTTGAGTCCGGAGGTTACTGATGCAATGCTGTTTACTTGCTTCTCTGTCTACCCGACTTGCTCgtaagtttt--ttataccatc-ctcagca-------ttcttgtattggaaatggaagtttaagatttgcagaaactcttccgacaattgctattgtatgtag---------------------------------------------------------------------------------------------------

upper sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G14100.1 (Arabidopsis thaliana), 5'ss of exon 6
GTCACTACAATATATTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCgtaagtttcact--ctcatgatttcttagtaaaacagtcgcctctttctttatttgtagtttcggacttgaatcaatctctgttcatccaaaatggaaaaaaaaattgtactgtctcaaaggatagttgtacggtatgttctttgcaattatgttggtaacttagattggctcatcatatttattttttctggcggctccag
|||| | ||| || |||||||| ||||| ||||| ||||| |||||||| || || | |  | |||||||||||| | |||||||||||||||||    |   | || |  || |  |||   | |      | |  ||  |||||    |  |  | |   ||||||||    |    |||      ||                                                                                                    
GTCATTTCAACATTTTTGTTGGAGATCTCAGTCCAGAGGTCACTGATGCAACATTATATCAAAGCTTTTCTGTCTTTTCCAGTTGTTCgtaagttctgttgcttgatcagctccttttaactaacttat---tctacttggttgtaaaa-caaatatca--taatctctgactgtgtctaatattttgaag---------------------------------------------------------------------------------------------------

upper sequence: GLYMA07G04640.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g00880.t01 (Vitis vinifera), 5'ss of exon 6
GTCACTACAATATATTTGTTGGCGATCTAAGTCCTGAGGTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCgtaagtttcactctcatgatttcttagtaaaacagtcgcctctttctttatttgtagtttcggacttgaatcaatctctgttcatccaaaatggaaaaaaaaattgtactgtctcaaaggatagttgtacggtatgttctttgcaattatgttggtaacttagattggctcatcatatttattttttctggcggctccag
|||||| ||| || |||||||| ||||| || |||||||||||||||||||| |||||||||||||||||||| | ||||||||||||||||| |||||| |    ||   |             |  |||||  |  ||| |  ||||   |||   ||  | | |     |      || |||| | |||||     |                                                                                        
GTCACTTCAACATTTTTGTTGGTGATCTCAGCCCTGAGGTTACTGATGCTACATTGTTTGCATGCTTTTCTGTTTTTCCCAGTTGTTCgtaagcttcactttacccatccttc-----------tgtttcttttgtcctttttcttttc---cttttttcctttttttcctttttcctttgaaaaacagaattgggtgattc--------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193335573|gb|FK301827.1|FK301827
EST:     GTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTC                         AGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG
genomic: GTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCgtaagtttca ... gcggctccagAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG
EST: gi|193662983|gb|FK600943.1|FK600943
EST:     GTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTC                         AGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG
genomic: GTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCgtaagtttca ... gcggctccagAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG
EST: gi|7146716|gb|AW508638.1|AW508638
EST:     GTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTC                         AGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG
genomic: GTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCgtaagtttca ... gcggctccagAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG
EST: gi|208037693|gb|GD832291.1|GD832291
EST:     CTATCCCAGTTGTTC                         AGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG
genomic: CTATCCCAGTTGTTCgtaagtttca ... gcggctccagAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG
EST: gi|208276269|gb|GE080331.1|GE080331
EST:     GTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTC                         AGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG
genomic: GTTACTGATGCTACGTTGTTTGCATGCTTTTCTGTCTATCCCAGTTGTTCgtaagtttca ... gcggctccagAGATGCAAGGGTTATGTGGGATCAGAAGACTGGGCGTTCAAGGGGATTTGG