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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctactattttaatcttatgagattgctgtatagtgggtcatgatttctcctaaattattcccaatgatattcag

Basic information

species Glycine max
transcript GLYMA07G03930.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03930.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g01630.5 (Oryza sativa), 5'ss of exon 7
ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctactattttaatcttatgagattg---ctgtatagtgggtcatgatttct---cctaaattattcccaatgatattcag--------------------------------------------------------
|| | || ||||| |||||||| ||||||||||| ||||| ||||| ||||| |||||    || ||  | | |   ||| ||||      || |     |||||   ||    |  | |  |     || |||   |||                                                        
ATTTGCCTCCACATCAGGAAATCGGAATGCCTTCACTCTCCCCTACCATGACTGAGgt----acaatactcaacagctgaaattgaataaataaataaaatcatggcatcatggcaaagagaaaattaaaggatgagcagtgtcatgtatctcttgagttgcctttatcatgtcaaacttattaaattgcctgtag

upper sequence: GLYMA07G03930.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g01500.1 (Oryza sativa), 5'ss of exon 6
ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctactattttaatcttatgagattgctgtatagtggg--tcatgatttctcctaaattattccc-aatgatattcag--------------------------------------------------------
| || || ||||| ||||||||||| ||||| || ||||| ||||||||||| |||||  ||  ||    ||    |  | |       | |        | |   | ||  |   |  |||   |||   || ||                                                         
ACCTGCCACCACATCAGGAAATTGGGATGCCATCACTCTCTCCTACAATGACTGAGgtatctgttacgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaccgttgctccttatctgtatttcttgaattgcatccatcggtgttacacctttaacaccagaagtattacaccttacacttgtattgtctgtag

upper sequence: GLYMA07G03930.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G015132_T01 (Zea mays), 5'ss of exon 5
ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgt----------tcctactatt-ttaatctta--tga--gattgctgtatagtgggtcatgatttctcctaaatt-attcccaatgatattcag---
| || || ||||| || |||||||| ||||| ||||| |||||||||||||| |||||           || |  ||| ||| | | |  |||  ||| || | || |    ||||  |    | |   || ||||   || || |   |   
ACCTGCCTCCACATCAAGAAATTGGGATGCCGTCTCTTTCACCTACAATGACTGAGgtatattcattgcccaaaaattgttagtatgaactgaatgatagccgaatggaaactcatattgctgcttgtctttattctgtataatttcttgtag

upper sequence: GLYMA07G03930.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G161969_T01 (Zea mays), 5'ss of exon 1
--------------------------------------------ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttc--ctactattttaatcttatgagattg--ctgtatagtgggt----------catgatttctcctaaattattcccaatgatattcag-----
                                            | || || ||||| || ||||||||||||||||| || |||||||| ||||| |||||     |  ||    || || || ||      ||| ||| | | |          ||  ||| || ||   || |   |  | | ||||       
TAATCCCTTTGACATTCTGTATTAACATGCTGTGCTTATTCCAGACCTGCCTCCACATCAAGAAATTGGAATGCCTTCACTTTCACCTACCATGACTGAGgtatatttgttacccaaaactcattagtacaacctgaataatagctgaactgaaaccagtattgctgcttgtttttattctgtaaaattctttgtag

upper sequence: GLYMA07G03930.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 5'ss of exon 7
ATCTCCCCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctactattttaatcttatgagattgc------tgtatagtgggtcatgatttctcctaaattattcccaatgatattcag
 ||| ||  |||| ||  | ||||||||||||||||| || ||||||||||| ||||    | |  || | |   ||||||| | |      ||   | |      |  | |     ||  | ||    || | || |||
GTCTTCCTGCACATCAAAAGATTGGAATGCCTTCTCTTTCTCCTACAATGACTGAGgcatgtgcctttctgaagctatgagaatacaaaccatgctcaatttactgttttatgattgaatgttttgtttatcaaatgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27809080|gb|CB063502.1|CB063502
EST:     CCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAG                         GGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCTGGT
genomic: CCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctacta ... tgatattcagGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCTGGT
EST: gi|213616567|gb|DB965737.1|DB965737
EST:     CCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAG                         GGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCTGGT
genomic: CCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctacta ... tgatattcagGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCTGGT
EST: gi|19269403|gb|BM885659.1|BM885659
EST:     CCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAG                         GGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCTGGT
genomic: CCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctacta ... tgatattcagGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCTGGT
EST: gi|209714755|gb|BW654105.1|BW654105
EST:     CCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAG                         GGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCTGGT
genomic: CCCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCTACAATGACAGAGgttcctacta ... tgatattcagGGTAACATTGCAAGATGGTTGAAGAAAGAAGGTGATAAAATCTCTCCTGGT