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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGATGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgttttcctctggctgtgtgtttgcagctgtttcttttttaatgcattatgcttattcaaatattggtgcttgatgtagcttttactgtaattagctttct...

Basic information

species Glycine max
transcript GLYMA07G03850.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g05110.t01 (Vitis vinifera), 5'ss of exon 6
CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGATGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgttttcctctggctgtgtgtttgcagctgttt-cttttttaatgca--ttatgcttattcaaatattggtgcttgatgtagcttttactgtaat-tagctttct
 |||||| |||||||  | ||||||||||||||||| || || || ||| ||||||||||||||||||| || |||||||||||||||||||||||||||||  |    | |  |||   | |||  | ||| |  || | || ||   |||||||       | ||      |||| | || |||  |||  | |||      
AAAAGCAATTGAAATCCTTGAAGCATATGAAGGGACATTAGAAGATGATTATCCTCCAGAAAATGAACGCTGCGAGCATGGGGAAATGCTTTTATACAAGgtaattgctttgacgtgcagt-gcatatatttgcacttctcattcagactatgcttgggagtttttttaatagtgatat-gcatttgttgttgtatag------

upper sequence: GLYMA07G03850.1 (Glycine max), 5'ss of exon 6
lower sequence: PP1S201_47V6.1 (Physcomitrella patens), 5'ss of exon 6
CAAAGCAGTTGAAATTTTGGAAGCATATGAAGGGACTTTGGATGAGGATCATCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATACAAGgttttcctctggctgtgtgtttgcagctgtttcttttttaatgcattatgcttattcaaatattggtgcttgatgtagcttttactgtaattagctttct-
 |  || ||  | || ||||| ||||||||||| |||||||| ||||||  |||||| |||| ||| |||| ||||||  | ||||||||  | || |||||  |    |    |   ||   |||  || |     |||  |  ||    ||    ||| ||    || |  |  |  | |||      || |||||   
GATGGCTGTAAATATATTGGATGCATATGAAGGAACTTTGGAAGAGGATTTTCCTCCTGAAAGTGAGCGGTATGAGCACAGTGAAATGCTCCTTTATAAGgtaatgaggtttacggacgtcc-cagtggtatagacgttacagtgttgatgttggaaaaacatccaagcattttagatgtcttagacagctttgcttttaa