Sequence
atgc intronic sequence ATGC exonic sequenceGAGAAGGCTGGAAAAGCGTATATATATCCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATCAATTTGAAGACTGTTGAGgcaagttgtgctgttaatttggtcatataggattttgacccttgcaatttttgttatgcgaaagctgtgattgatttataagtgaaattgtgaataacat...
Basic information
species | Glycine max |
transcript | GLYMA07G03820.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G03820.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g49000.1 (Oryza sativa), 5'ss of exon 6
GAGAAGGCTGGAAAAGCGTATATATATCCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATCAATTTGAAGACTGTTGAGgcaagttgtgctgttaatttggtcatataggattttgacccttgcaatttttgttatgcgaaagctgtgattgatttataagtgaaattgtgaataa-cat---
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ACGGAGGCTGGAGAAGCGTATTTATATTCCACTTCCAAATTTTGAAAGCAGAAAGGCACTCATCAATATTAACCTTAAAACTGTTGAGgtatgatattac-ttatcttttctgtgttgtaattccatcct---agttccctttctgtttactccttcagcgttttatgattgcctccttaatcaaacagtgc
upper sequence: GLYMA07G03820.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G80350.1 (Arabidopsis thaliana), 5'ss of exon 6
GAGAAGGCTGGAAAAGCGTATATATATCCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATCAATTTGAAGACTGTTGAGgcaagttgtgctgttaatttggtcatataggattttgacccttgcaatttttgttatgcgaaagctgtgattgatttataagtgaa-attgtgaataacat-
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GAGGAGGTTGGAAAAACGTATATATATCCCACTTCCAGATTTTGAAAGTCGTAAGGCTCTTATCAATATCAATCTGAGAACAGTTGAGgttagttgtgg-------------atacattgttacaacactcgcaaatctctctactggtccaacgcaatcaatttagcaatgaacattgtcacttttcag
upper sequence: GLYMA07G03820.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g05260.t01 (Vitis vinifera), 5'ss of exon 6
GAGAAGGCTGGAAAAGCGTATATATATCCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATCAATTTGAAGACTGTTGAGgcaagttgtgc-tgttaatttggtcatataggattttgacccttgcaatttttgttatgcgaaagctgtgattgatttataagtgaaattgtgaataacat--
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GAGGAGGCTGGAAAAGCGTATATACATCCCTCTCCCAAATTTTGAGAGTCGCAAGGAGCTTATACGGATCAATTTGAAAACTGTGGAGgtaaattgactacattaagcatgcaataattttatctaggattagagacatgtaggactaggaagctataacagtcctg---gttgaatcttacctatcatttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|11274568|gb|BF324910.1|BF324910EST: ATTTTGAGAGTCGTAAAGAACTGATCCGGATCAATTTGAAGACTGTTGAG GTGGCACCTGATGTCAATATAGACGAAGTGGCTCGCCGGACAGAGGGATAT
genomic: ATTTTGAGAGTCGTAAAGAGCTGATCCGAATCAATTTGAAGACTGTTGAGgcaagttgtg ... ctttcaccagGTGGCACCTGATGTCAATATAGACGAAGTGGCTCGCCGGACAGAGGGATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGAAGGCTGGAAAAGCGTATATATATCCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGAATCAATTTGAAGACTGTTGAGgcaagttgtgctgttaatttggtcatataggattttgacccttgcaatttttgttatgcgaaagctgtgattgatttataagtgaaattgtgaataacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA