Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGTGGCCAAAGAAGTTGTGGCCGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCgtgggtgtctcacttcttttgcatccatttctttttctgtcccttaacatataatgtgatctaatgatatgtttctttatacatttgtttttattatgat...

Basic information

species Glycine max
transcript GLYMA07G02680.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02680.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g46310.3 (Oryza sativa), 5'ss of exon 8
CGGTGGCCAAAGAAGTTGTGGCCGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCgtgggtgtctcacttcttttgcatccatttctttttctgtcccttaacatataatgtgatct-aatgatatgtttctttatacatttgtttttattatgat
|     |   ||||||||||   || |||||||||||  ||||| | ||| |||| ||||| |||||||| || ||||| ||||| || ||||| |||||||| |       |||| | | || || |||       ||||||  |||||||  |    | |  |  | |   || |  ||  |||  || ||||||    
CAAATTCTTCAGAAGTTGTGAGGGGCCTTTTTGTTCCTGAACTTAAAGGGAATGGAGCCACAGGTCTTGCTATCTCACTACTTGGTGCTATGGTGATGCCgtgag-------cttcctgtccaccccttt-------tgtccca-aacatatctttaactttcgacaaaaacattttccatgtatt-attcttattacag-

upper sequence: GLYMA07G02680.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0070g00210.t01 (Vitis vinifera), 5'ss of exon 8
CGGTGGCCAAAGAAGTTGTGGCCGGTCTTTTTGTTCCAAAACTTCAGGGGCATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCgtgggtgtctcacttcttttgcatccatttctttttctgtcccttaacatataatgtgatctaatgatatgtt--tctttatacatttgtttttattatgat
|     |   ||||||  ||   || || ||||||||| ||||  | ||  ||||||| ||||||||||||||||| |||||||| || |||||||||||||  || ||| |  ||  |   |     || ||||||  | | ||     | ||  |  |||  |  | ||||     | || || ||| |           
CCAATTCTTCAGAAGTCTTGCGTGGACTCTTTGTTCCACAACTCAAAGGAAATGGTGCTACTGGTCTTGCAATTTCCCTCCTTGGTGCTATGGTTATGCCgtaagtttcttatgtccatgagaagtgcttatttttccatgcatttttcaaaaaaatattctcttctt-tgttgactctcatgcacttgctgcag-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402052|gb|EV271865.1|EV271865
EST:     CATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCC                         CCACAATCTATTCCTCCACTCAGCACTGGTGCTTTCCAGGAAAATACCGCG
genomic: CATGGTGCCACTGGTCTTGCAATTTCACTCCTTGGGGCAATGGTTATGCCgtgggtgtct ... tttgcttcagCCACAATCTATTCCTCCACTCAGCACTGGTGCTTTCCAGGAAAATACCGCG