Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgtttattttacaattcttccttacagattttaattaattcgctacatgcttcttacttgcttggatgacag

Basic information

species Glycine max
transcript GLYMA07G02270.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02270.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00010.t01 (Vitis vinifera), 5'ss of exon 5
CCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgtttattttacaattcttccttacagattttaattaattcgctacat---gcttcttacttgcttggatgacag---
||| ||| | ||||||||| ||||| | ||||||||||| |||||||||||| | |  |||||||| |||||  | || |||||||| ||  | || ||||| ||  |    ||     ||||  ||    ||      |  || |||| ||   | | || || |||||   |||      
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctatatcttgttgctaacctgcttttgtgatgatag

upper sequence: GLYMA07G02270.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0052g00290.t01 (Vitis vinifera), 5'ss of exon 6
CCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgt--attgt---ttattttacaattcttcctt--acagattttaattaattcgctacatgcttcttacttgcttgg--atgacag
 || ||| | |||||||| || ||||| ||||||||||| || |||||||| || |  |||||||| |||||||| ||||| ||||| |||||||| |||||   ||||   |||  | ||| || |   ||  |   |||   || || | |||      |      ||| |  |  ||  |||
TCCCAATTTAAAGAGTGTCAGGGAACTGATTTACAAGAGGGGTTATGGAAAACTTAACAAGCAGAGAACTGCTCTGACTGATAACTCAATCATTGAACAGgtttgttgtaggttaaataacatttatatgttcgatgtattgctataaactggcttttcaatgacattttggtatgttattgcag

upper sequence: GLYMA07G02270.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00140.t01 (Vitis vinifera), 5'ss of exon 4
CCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgtt--tattttacaattc--ttccttacagattttaattaattcgctacatgcttcttacttgcttggatgacag---
||| ||| | ||||||||| ||||| | ||||||||||| |||||||||||| | |  |||||||| |||||  | || |||||||| ||  | || ||||| ||  |   ||| |  |  |   ||   ||       |  ||   |   | | || | || || |||||   |||      
CCCCAATTTGAAGAGTGTGCGAGAATTGATTTACAAGAGGGGGTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgtttttatgtcattctgtatcttggttttctatgagcgattgtttgctttat-cttgttgctaacctgcttttgtgatgatag

upper sequence: GLYMA07G02270.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 4
CCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgtttattttacaattcttccttacagattttaattaattcgctacat---gcttcttacttgcttggatgacag---
||| ||| | ||||||||| ||||||| ||||||||||| || ||||||||| | |  |||||||| |||||  | || |||||||| ||  | || ||||| || | | |  |  |  ||||  ||     |      |  || |||| ||   | | || || |||||   |||      
CCCCAATTTGAAGAGTGTGCGAGAACTGATTTACAAGAGGGGCTATGGAAAGTTGAACAAGCAGAGAACTGCCTTGACCGACAACTCCATTGTGGAACAGgt-ttttatgtcctgta--tcttggttttttttgagggattgtttgctatatcttgttgctaacctgcttttgtgatgatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214008405|gb|DB989971.1|DB989971
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|214009014|gb|DB987093.1|DB987093
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|193654544|gb|FK597854.1|FK597854
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|26269590|gb|CA820653.1|CA820653
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|209727904|gb|BW663418.1|BW663418
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|7925315|gb|AW831402.1|AW831402
EST:     AGCTAATGAAGCAGAG-ACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGGCA-GTATGGGATCATATNCACTGGAGATCTGATCCCTGAG
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGG-CAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAG
EST: gi|213595918|gb|DB955982.1|DB955982
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATC
EST: gi|209704639|gb|BW656645.1|BW656645
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|151410201|gb|EV280016.1|EV280016
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGA
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGA
EST: gi|58019438|gb|CX706180.1|CX706180
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|9204281|gb|BE330505.1|BE330505
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|58019895|gb|CX706637.1|CX706637
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|208173743|gb|GD967200.1|GD967200
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|7924220|gb|AW830246.1|AW830246
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|31460201|gb|CD402169.1|CD402169
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|13481356|gb|BG510699.1|BG510699
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|192302088|gb|FG995222.1|FG995222
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|209710620|gb|BW665059.1|BW665059
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|13240472|gb|BG359781.1|BG359781
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|213598422|gb|DB975909.1|DB975909
EST:     TGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: TGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|23727398|gb|BU761728.1|BU761728
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|151394375|gb|EV264246.1|EV264246
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACGACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|5057333|gb|AI735809.1|AI735809
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|15814466|gb|BI786741.1|BI786741
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCAT
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCAT
EST: gi|15286026|gb|BI469917.1|BI469917
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|254326340|gb|GR840932.1|GR840932
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|7589773|gb|AW705540.1|AW705540
EST:     AGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|192330146|gb|FK019786.1|FK019786
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|192317146|gb|FK009761.1|FK009761
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|7684798|gb|AW755446.1|AW755446
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|213608788|gb|DB974429.1|DB974429
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|151410828|gb|EV280643.1|EV280643
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|57574748|gb|CX547723.1|CX547723
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|214008389|gb|DB986331.1|DB986331
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|192317131|gb|FK009760.1|FK009760
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAC                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|22540336|gb|BU090179.1|BU090179
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|254326341|gb|GR840933.1|GR840933
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|31472258|gb|CD414286.1|CD414286
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|213617865|gb|DB967283.1|DB967283
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATC
EST: gi|51338534|gb|CO982400.1|CO982400
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|151411624|gb|EV281435.1|EV281435
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|5058211|gb|AI736687.1|AI736687
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAN                         GCTCTGNGCAAGTATGGAATCATATCCACTTGA-GATCTGATCCATGAGAT
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACT-GAAGATCTGATCCATGAGAT
EST: gi|298179125|gb|HO027596.1|HO027596
EST:     GGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|13477789|gb|BG507528.1|BG507528
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|15663259|gb|BI700630.1|BI700630
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|209722063|gb|BW659305.1|BW659305
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|6567236|gb|AW234847.1|AW234847
EST:     AGCTAATGAAGCAGATGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGNGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|209727903|gb|BW663417.1|BW663417
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|21601327|gb|BQ611658.1|BQ611658
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|9986855|gb|BE660963.1|BE660963
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAN                         GCTCTGGGCAAGTATGGAATCATATC-ACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|6746914|gb|AW317370.1|AW317370
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|151409563|gb|EV279371.1|EV279371
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|151394743|gb|EV264614.1|EV264614
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|254342198|gb|GR853335.1|GR853335
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
EST: gi|214005556|gb|DB984564.1|DB984564
EST:     AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAG                         GCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC
genomic: AGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgttta ... tggatgacagGCTCTGGGCAAGTATGGAATCATATCCACTGAAGATCTGATCCATGAGATC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCAAATCTCAAGAGTGTGAGAGAACTTATTTACAAGAGAGGGTATGGAAAGCTAATGAAGCAGAGGACTGCTCTAACTGACAACTCTATCATTGAGCAGgtattgtttattttacaattcttccttacagattttaattaattcgctacatgcttcttacttgcttggatgacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG