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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATCatatccttgaaagtttttgtgtatacattatttaatatttttgtaattatttaaaacatttgggacatctttattatgtcaatccttaacatatatgatatac

Basic information

species Glycine max
transcript GLYMA07G02180.1
intron # 6
splice site 5'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G02180.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g04170.t01 (Vitis vinifera), 5'ss of exon 6
GTACAAACTTTGACAAAAGCTTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATCatatccttgaaa----------gtttttgtgtata-cattatttaatatttt-tgtaatta---tttaaaacatttgggacatctttat-----tatgtcaat-ccttaacatatatgatatac
                 ||||||||  ||  |||||||||| || ||||||||||||||||| || |||||||||| | |||          | ||||    ||| || | | | || ||   |  | ||     |||  || | ||| | || || ||      ||| || |  |||  | |||   ||  | 
-----------------AGCTTGGGGATATACATCTGCTGATCAATTTCTGCATTGTCTACCTCTGCATCATATCCATAAAACCATATTTCGGATTTTAAAGATATCAATTTCTCATgttaagtacagtttgaccttaccacttgtggaatattttcatgaattcatggcattgtcttgccttatgctattaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162286164|gb|FC456612.1|FC456612
EST:     ACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC                         ATGTTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCA
genomic: ACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATCatatccttga ... tatgatatacATGTTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCA
EST: gi|11687559|gb|BF595235.1|BF595235
EST:     TTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC                         ATGTTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTC
genomic: TTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATCatatccttga ... tatgatatacATGTTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTC
EST: gi|17153356|gb|BM143289.1|BM143289
EST:     CTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATC                         ATGTTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCA
genomic: CTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATCatatccttga ... tatgatatacATGTTCATGGGCTTTTCAATGGTTTAATGGCCCCTCTCTATGCAGGTTCCA
EST: gi|254322525|gb|GR837939.1|GR837939
EST:     TTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTAC-ACTACATC                         ATGTTCATGGGCTTTTCAAT
genomic: TTGGGAGTACTCATCTGCTGACCAGTTTCTGCATTGTCTACCACTACATCatatccttga ... tatgatatacATGTTCATGGGCTTTTCAAT