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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGgtatggttattttgccgcttttcctggtgatacaacttcatctataatgtgtttatttttgtccctgtttatgcccatatgattgtattatttaattcta...

Basic information

species Glycine max
transcript GLYMA07G01940.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01940.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 9
CCATGGAGTGTGCCAGAGGTGCTACGTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGgtatggttattttgccgcttttcctggtgatacaacttcatctataatgtgtttatttttgtccctgtttatgc-ccatatgatt-gtattatttaattcta---
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CCATGGAGTGTGCCTGAAGTGTTGCGTCCTCTGTATGAATCATCAACAGTGCTTGCTCAAAAAACAACAATGGCGgtatgactatttt-----ttttcctgtgggtgaatttataacttttaactgctactctcagatacgatgtatgtgttagctaaccagtgatatcctgaatgatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19268757|gb|BM885013.1|BM885013
EST:     GTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCG                         GCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTC
genomic: GTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGgtatggttat ... ttcctcgtagGCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTC
EST: gi|9985955|gb|BE659961.1|BE659961
EST:     GTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCG                         GNCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTC
genomic: GTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGgtatggttat ... ttcctcgtagGCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTC
EST: gi|16348853|gb|BI974448.1|BI974448
EST:     GTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCG                         GCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTC
genomic: GTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGgtatggttat ... ttcctcgtagGCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTC
EST: gi|9985954|gb|BE659960.1|BE659960
EST:     GTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCG                         GCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTC
genomic: GTCCACTGTACGAATCATCAACAGTACTGGCTCAGAAGACAACTATGGCGgtatggttat ... ttcctcgtagGCCCTACGTCATCTAAGGCAGATTTCACATGAAGTTTCTCAGTCCAACGTC