Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaaccttgagggttcctattttaggctgttcagtgtggaatcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt...

Basic information

species Glycine max
transcript GLYMA07G01440.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os02g13110.2 (Oryza sativa), 5'ss of exon 6
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtga------tttgaaaccttgagggttcctattttaggctgttcagtgtggaatcttgctttttggt---tatctttatttgttttaacgtagtgttgatttgaaagt
|| ||  |||| ||    |   | ||  |  |||| ||  | |||||| | |||||||||||||| ||||||||||| ||||||||||| |||| |      ||    |  ||  || |  ||  |  |||||  | | | || ||| ||| || ||| |   |   |||||| | |  ||  |  |    ||        
GTCACTGGCCAAGATTTGAACCTTGTACCAAGATGCCGGCGTGTATATTCACATGCTCATGATTACCATATTAATTCCATTTCAAATAATAGgttagctaccttcctgatattatggatatctgatc-aggcttgtaattttgtaattttgattcttgttctgttgttttattggctccaaactgttacacat--------

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os06g36770.1 (Oryza sativa), 5'ss of exon 6
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaa-----accttgagggttcctattttaggctgttcagtgtggaatcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt
||  | || || ||    |   | || ||| |||||||  | |||||||| |||||||||||||| |||||||| ||||| ||||  || |||| | |   |      | ||||   ||  | | ||| |||||  |      |  | |  ||| |   |   || || ||| |  |  |  | |    |||||   
GTTGCAAGTCAAGATGTGAACCTTGTTGCTAGATGTCGACGTGTATATGCACATGCTCATGATTACCATATTAACTCTATATCAACCAATAGgtaagtatgatcattgcattgaatattaatctattaagctgt--atccctaatgcattttttctccatgagttcatctgtatctatttcttttcatgttgaa---

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G069631_T02 (Zea mays), 5'ss of exon 6
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtga------tttgaaaccttgagggttcctattttaggctgttcagtg-tggaatcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt
|| ||  |||| ||    | |   || ||  || |  |  | |||||||||||||| ||||| || ||||||||||| ||||||||||| |||| |      ||    |  ||  || |  ||| |  |  |||   |  | |   |||||| | |     | ||   | ||   ||  |  | ||||   ||      
GTTACAGGCCAAGAATTTACTCATGTTGCGAGAAGCAGACGTGTATATGCCCATGCCCATGACTACCATATTAATTCCATTTCAAATAATAGgttagtttccttcatgatattatggatatctaataaaatctgcaaaacgatatgatcttgttgtacaaatgtcc--agtttccttgtctcattgttatctta-----

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G142334_T02 (Zea mays), 5'ss of exon 6
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaaccttg---agggttcctattttaggctgttcagtgtggaatcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt----
|| || | ||| || || ||  | |  ||  | || || ||||||||||| ||||| ||||| |||||||| ||||| || |||||||||||||  ||   | |  |      |   | | | | ||  | | || |   |||| |  |||   | | || |||   | ||| | | || ||   ||||||   |    
GTTACAACCCAAGAAACAAGCCTTGCTGCGAGTTGCCGAAGAGTATATGCTCATGCACATGACTATCATATAAATTCAATATCAAATAACAGgtccttcacatcactacaccagtcacttgtatcagtatatgcattt--gaatgtacctta--gctaatgtttgagtttttcagc-tattg--aatttgagtatgaca

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G165418_T04 (Zea mays), 5'ss of exon 6
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAG-
|| ||||| |  ||  | |     || ||| |||||||  | |||| ||| |||||||| ||||| ||||| ||||||||||||||||| ||    || |||||| || ||||   |||  |||| | |  | | || | || ||  |  |  |  | | || |  || | ||| |  ||     || |        
GTTACCAGTCTAGAAGCAAACCCTGTTGCTAGATGTCGACGTGTATTTGCTCATGCTCACGATTACCATATAAATTCTATTTCAAATAATAGgtcagtaatttgatacattgaattttctcatttcaaggggatccattttgcaacttctccatgggttcatatgcatctctttgagagtttgagtgttcct-----

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G164185_T02 (Zea mays), 5'ss of exon 6
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaaccttgagggttcctattttaggctgttcagtgtggaatcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt--------
|| || ||||| || || ||| | |   |  | || || ||||||||||| ||||| ||||| || ||||| ||||| || |||||||||||||  |     || |  |    |   | | ||   |    |  ||  ||    | ||||  | || ||  |||||  |      | | ||  ||  ||| |        
GTTACAAGCCAAGAAACAAGTCTTGCCACAAGTTGCCGAAGAGTATATGCTCATGCACATGACTACCATATAAATTCGATATCAAATAACAGgtcctgc---acatatattcatttgaatgtatcatagctaacgttcaa----ggttttcagcta-ctgaatttggatatggaaatttttagttctaaattttttgctt

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G51690.3 (Arabidopsis thaliana), 5'ss of exon 8
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaaccttgagggttcctattttaggctgttcagtgtggaatcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt
||||| ||||||||| | ||    |||||| ||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||||||   ||     |     ||     |  ||      |||    | | | ||   || || ||   |   |  |    | | ||     | | | |   | 
GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGCTCATGCTCATGATTATCATATTAATTCAATCTCAAATAACAGgtaggttattcacccattggaattcaacttgcttccttcttactagcaactgctttatttgtccgcaaaaaattcaatgatgtcactataagtcgtctga

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G17720.2 (Arabidopsis thaliana), 5'ss of exon 6
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaaccttgagggttcct--attttaggctgttcagtgtgga-atcttgctttttggttatctttatttgttttaacgtagtgttgatttgaaagt
|| |||||||| ||||| |   | |||||| |||| || ||||| |||||||||||||||||||| ||||||||||| || || |||| ||||| ||  |    | | ||  ||||   |  |||     || | | | || ||||   |     ||| |   | | | | |        | |  || | |    
GTTACCAGCCAGGAGACTAACCTTGTGGCTAGATGCCGAAGAGTGTATGCCCATGCTCATGATTACCATATTAATTCAATCTCCAATAGCAGgtaatc-gttttcctaagttttccctcaggttatatgttttactcttgatatctctttaacacgtttttgctgtctttctccttaatttttccatctcagg--

upper sequence: GLYMA07G01440.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g02470.t01 (Vitis vinifera), 5'ss of exon 6
GTAACCAGCCATGAGACCAGTTTGGTGGCTCGATGTCGTAGAGTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaaaccttgagggttcctattttaggctgttcagtgtggaatcttgctttttggttatctttat-ttgttttaacgtagtgttgatttgaaagt---
||| | |||| |||||||||  |||||||| ||||||||||||| ||||| |||||||| || |||||||| ||||||||||||||||| ||||| ||  | | |        |   ||| | |    |  | ||| |    |   |||     | | || |  |||||      | | ||| || | |       
GTATCAAGCCCTGAGACCAGCCTGGTGGCTAGATGTCGTAGAGTTTATGCTCATGCTCACGACTATCATATCAATTCTATTTCAAATAATAGgtggttccacaacccat--actttaattctcg--catataatgtagctgttctgtttacatatctgttcaccttgttcatgtattgggtttatcttatgacctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22525826|gb|BU084637.1|BU084637
EST:     GTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAG                         CGATGGAGAAACTTTCATATCAGCTGATGATTTACGAATAAATCTTTGGAA
genomic: GTATATGCCCATGCTCATGATTATCATATTAATTCTATTTCAAATAACAGgtgatttgaa ... tatctgctagCGATGGAGAAACTTTCATATCAGCTGATGATTTACGAATAAATCTTTGGAA