Sequence
atgc intronic sequence ATGC exonic sequenceATTCGTCCAGATCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatattttatgttgggatatgtaactgtagtttttttcttttaaatttcgttcctctatgatgaaatgatttttggtctgaaatgaattgtcttttaagaagcatgtatgatgtttatgtatagtattgtattttgtgagaactttatttatttaagcaacaatttctgtaatcattgtgcag
Basic information
species | Glycine max |
transcript | GLYMA07G01260.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01260.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g10050.2 (Oryza sativa), 5'ss of exon 6
ATTCGTCCAGATCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatattttatgttgggatatgtaactgtagtttttttcttttaaattt-cgttcctctatgatgaaatgatttttggtctgaaatgaattgtcttttaagaagcatgtatgatgtttatgtatagtattgtattttgtgagaactttatttatttaagcaacaatttctgtaatcattgtgcag
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ATTCGTCCAGATCGCCAAACATTATATTGGAGTGCTACTTGGCCAAAGGAAGTTGAACAGCTAGCAAGGAACTTTCTTTTCGACCCATACAAGgtg-gttatttt-----------tgccaatgcatcattttgcagatgaatttatggcagactacggt-atctgcttcatg---tgaactcaattgctttttttgtgctgcag----------------------------------------------------------------------------
upper sequence: GLYMA07G01260.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G143246_T01 (Zea mays), 5'ss of exon 6
ATTCGTCCAGATCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaa--gatattttatgttgggatatgtaactgtagtttttttcttttaaatttcgttcctctatgatgaaatgatttttggtctgaaatgaattgtcttttaagaagcatgtatgatgtttatgtatagtattgtattttgtgagaactttatttatttaagcaacaatttctgtaatcattgtgcag
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ATTCGTCCAGATCGCCAAACACTTTACTGGAGTGCTACCTGGCCGAAGGAAGTTGAGCAGCTAGCAAGGAATTTCCTTTTTGACCCATACAAGgtacttgctatagtccaccca-acattttgcagtgcatctttccatttctactgtatgtcaacactgctgaatttaatatgatgcag------------------------------------------------------------------------------------------------------
upper sequence: GLYMA07G01260.1 (Glycine max), 5'ss of exon 6
lower sequence: AT1G55150.1 (Arabidopsis thaliana), 5'ss of exon 6
ATTCGTCCAGATCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatattttatgttgggatatgtaactgtagtttttttcttttaaatttcgttcctctatgatgaaatgatttttggtctgaaatgaattgtcttttaagaagcatgtatgatgtttatgtatagtattgtattttgtgagaactttatttatttaagcaacaatttctgtaatcattgtgcag
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ATTCGGCCAGACCGTCAAACTTTGTACTGGAGTGCCACTTGGCCTAAGGAGGTGGAACAACTATCGAAGAAGTTTCTTTATAACCCATACAAAgtaagagagt-------aagagacatctctctaacgtttctcacagtggtttagtt-----gtcaacaaaaacttatcaggcttctttggtcttaattgcag-------------------------------------------------------------------------------------
upper sequence: GLYMA07G01260.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g02100.t01 (Vitis vinifera), 5'ss of exon 6
ATTCGTCCAGATCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt-ttatgttgggatatgtaac-tgtagtttttttctttt--aaatttcgttcctctatgatgaaatgatttttggtctgaaatgaattgtcttttaagaagcatgtatgatgtttatgtatagtattgtattttgtgagaactttatttatttaagcaacaatttctgtaatcattgtgcag
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ATTCGTCCTGATCGTCAAACCCTCTATTGGAGTGCTACATGGCCCAAGGAGGTGGAACAACTTGCTAGGAAGTTCCTTTACAACCCATGTAAAgtaagattctcttacatttatgttgaaaatatgctggctgatacttctccaaatgttgaaaatatgcaagctgtcagttttt--tcctaattgtattatttc-----------------------------------------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58018178|gb|CX704920.1|CX704920EST: CAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAA GTAATTATAGGCTCTTCTGATTTAAAAGCTAACCATGCAATACGGCAATAT
genomic: CAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatatt ... cattgtgcagGTAATTATAGGCTCTTCTGATTTAAAAGCTAACCATGCAATACGGCAATAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATTCGTCCAGATCGTCAAACTTTGTATTGGAGTGCTACCTGGCCAAAGGAGGTCGAACAATTGGCAAGGAAGTTCCTTTATAACCCATACAAAgtaagatattttatgttgggatatgtaactgtagtttttttcttttaaatttcgttcctctatgatgaaatgatttttggtctgaaatgaattgtcttttaagaagcatgtatgatgtttatgtatagtattgtattttgtgagaactttatttatttaagcaacaatttctgtaatcattgtgcag
- - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA