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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTAGATACAAACAAGGATATCGTATTCACATATGATGTTTCCTTCAAGgtattgctgattaaaatcttggctactcataaattttcacctcattcattatatgatacgttaagccaaagtttgttggtattttttcag

Basic information

species Glycine max
transcript GLYMA07G01240.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G01240.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g02140.t01 (Vitis vinifera), 5'ss of exon 6
ATGCAATAAAGATACCAAGAATTTGATGCAAGGTAGTACTGTCCCACAAGAAGTAGATACAAACAAGGATATCGTATTCACATATGATGTTTCCTTCAAGgtattgctgatt-aaaatcttggctactcataaattttcacctcattcattatatgatacgttaagccaaagtttgttggtattttttcag
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ATGCAATGCAAATACCAAAAATTTGATTCAAAGTACCACTGTCCCACAAGAAGTTGATGCAGATAAGGATATTGTATTTACATATGATGTTTCCTTCGAGgtaattctttttcgaaatccttgcttgtc------------ttctcccatgatacggttttttttacttgtttttgccttattattttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193537291|gb|FK495376.1|FK495376
EST:     ATATCGTATTCACATATGATGTTTCCTTCAAG                         GAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAAT
genomic: ATATCGTATTCACATATGATGTTTCCTTCAAGgtattgctga ... attttttcagGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAAT
EST: gi|208286458|gb|GE086516.1|GE086516
EST:     GATATTGTATTCACATATGATGTTTCCTTCACG                         GAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAAT
genomic: GATATCGTATTCACATATGATGTTTCCTTCAAGgtattgctga ... attttttcagGAAAGTGATATCAAATGGGCATCACGGTGGGACACATATCTTTTAATGAAT