Sequence
atgc intronic sequence ATGC exonic sequenceGAACACTTTGGATAATAAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTgtaagtgcagactattcttttgtcagtaacatgtactccatccggtcttgaatataagcaaaaaaaatctcctctatcttagtctcaaatataagcaaat...
Basic information
species | Glycine max |
transcript | GLYMA07G01190.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G01190.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g46290.1 (Oryza sativa), 5'ss of exon 6
GAACACTTTGGATAATAAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTgtaagtgcagactattcttttgtcagtaacatgtactccatccggtcttgaatataagcaaaaaaaatctcctctatcttagtctcaaatataagc---aaat
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CAAGACATTAGACAATGAGCTTGAAGCGGTACAGGGAATGAAACTTTCCAGAGGCTACATATCTCCTTACTTTGTGACTGATCAGAAGACTCAGAAGTGTgtaagtctg---tatttcttggtcaaatcagtgaatccagcatgaactacattgtagaaagttcgctacattccctcatttgctttgactttatgatggaaat
upper sequence: GLYMA07G01190.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G074790_T03 (Zea mays), 5'ss of exon 6
GAACACTTTGGATAATAAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTgtaagt--gcagactattcttttgtcagtaacatgtactcca-tccggtcttgaatataagcaaaaaaaatctcctctatcttagtctcaaatataagcaaat
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CAAAACATTGGACAATGAGCTTGAAGCAGTACAGGGAATGAAGCTGTCCAGAGGATACATATCTCCTTACTTTGTGACTGATCAAAAGACTCAGAAATGTgtaagtctgcatattttagctgaaccaattaattcagcacaaatgatgtcctaggttttttttggggaaatcttgggtacccttgccatctttgtttttt---
upper sequence: GLYMA07G01190.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G13860.1 (Arabidopsis thaliana), 5'ss of exon 7
GAACACTTTGGATAATAAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTgtaagtgcagactattcttttgtcagtaacatgtactccatccggtcttgaatataagcaaaaaaaatctcctctatcttagtctcaaatataagcaaat
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TAACACTTTAGATAACGAGCTGGAAGTAGTGGAAGGAATGAAGCTAGCCAGAGGTTACATTTCTCCTTATTTTATCACGGATGAGAAGACCCAGAAATGCgtgagtgaaatctatcgtgtt--tagtattgtgt---------gaaaaggaaagaaagggtattgaactacctgtgcttgtttttcag------------
upper sequence: GLYMA07G01190.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv09s0002g02240.t01 (Vitis vinifera), 5'ss of exon 6
GAACACTTTGGATAATAAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTgtaagtgcagactattcttttgtcagtaacatgtactccatccggtcttgaatataagcaaaaaaaatctcctctatcttagtctcaaatataagcaaat-----
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AAATACTTTGGACAGTGAGTTAGAAGTGGTGGAAGGAATGAAGCTAGCGAGAGGCTATATATCTCCTTATTTTGTTACTGACCACAAGACCCAGAAATGTgtaagttcagatctttatttt-taaacacaaatttgcctatctaaaaaagaataataataattgat-caccctgtaactgaa---caaagatgaggtctcccactMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208061375|gb|GD858011.1|GD858011EST: GAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGT GAATTGGAGAACCCCTTTATTCTCAT
genomic: GAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTgtaagtgcag ... attttattagGAATTGGAGAACCCCTTTATTCTCAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAACACTTTGGATAATAAGTTGGAAGTGGTAGAAGGAATGAAGTTAACCAGAGGCTACATATCTCCTTATTTTATTACTGATCAGAAGACCCAGAAATGTgtaagtgcagactattcttttgtcagtaacatgtactccatccggtcttgaatataagcaaaaaaaatctcctctatcttagtctcaaatataagcaaat
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