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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTTGGCTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTAGTTACTGgtattgtatatattagatagttgttttttttattattataaataatccatggatttacttcaatcaaaatctatacatgtgtataggagagacatatgtt...

Basic information

species Glycine max
transcript GLYMA07G00630.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 9
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 7
GGTTTGGCTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTAGTTACTGgtattgtatatattagat-agttgttttttttattattataaataatccatggatttacttcaatcaaaatctatacatgtgtataggagagacatatgtt--
||  |    ||||| ||||||||||| | ||||||||||||||| ||||| || ||  |||| ||||| |||||   ||   |||||| | |  | ||   |  |  | |  ||  || ||  || |  |  |||| |  | || | | || |||  |    |    |||   
GGGATAAAAGAAGGCTGGTATGATGGAGCAAGCATTGCTTTTGCTGTTCTCCTAGTTGTTGTTGTTACAGgtatgtaattagttagatcaatcatcttacctgattatttctatggtcgattaatatgtt--aatccacttttaga-aggtttatctgttgcattactgtcag

upper sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 9
lower sequence: AT3G21180.1 (Arabidopsis thaliana), 5'ss of exon 6
GGTTTGGCTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTAGTTACTGgtat-tgtatatattagatagttgttt-tttttattattataaataatccatggatttacttcaatcaaaatctatacatgtgtataggagagacatatgtt-------
||||||   ||||| |||  |||||| ||||||||||| ||||| ||| | ||||||||||| ||||| ||||| |  || | |      ||  |   || ||   |  ||    ||||  ||   ||| | || | || ||  ||   | | || |    |    |   ||       
GGTTTGAAAGAAGGTTGGCTTGATGGTGGAAGCATTGCCTTTGCGGTTTTGCTTGTCATTGTTGTTACAGgtatatacatgtttctttctgtgataaattcttgaaaacattctcaatct-tgctcttaatccatttaagataaatctttctttacactttatcttttgattgtttcag

upper sequence: GLYMA07G00630.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 8
GGTTTGGCTGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTCTTCTTGTCATTGTAGTTACTGgtattgtatatattagatagttgttttttttattattataaataatccatggatttacttcaatcaaaatctatacatgtgtataggagagacatatgtt---
||| ||   |||||||||||||||||||| |||||||| ||||||||  ||||||| ||  | |||||||||||||  |  ||  | |  || || | ||| | | |     |  |   | || |||  |  |    ||  |   ||||  | ||  | ||    |  ||   
GGTGTGAAAGAAGGATGGTATGATGGGGGTAGCATTGCCTTTGCAGTGTTTCTTGTTATATTTGTTACTGgtattggcttgat--gttcattattgtcttt-tgagtgcggctcttggctagaattaacttgaagtcaacttgatcatgattttataatagtttaaatttcat