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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATATTATGATGAAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGAATGTTCGGCGCGATGTTGTCAAACACAATTCAAATGTTCCATCCCAGgttggttattactatctacatacatttgatttgaattttttgatgttgatgtttaattgatcttcatgcgagtctttctcttttggcttggtgcaagctt...

Basic information

species Glycine max
transcript GLYMA06G47010.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G47010.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv13s0047g00170.t01 (Vitis vinifera), 5'ss of exon 6
ATATTATGATGAAGACCTTCAAGCTGCAAGATCTTACTATTTTAAATCTTTGAATGTTCGGCGCGATGTTGTCAAACACAATTCAAATGTTCCATCCCAGgttggttattactatctacatacatttgatttgaattttttgatgttgatgtttaat-tgatcttcatgcgagtctttctcttttggcttggtgc--aagctt
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ATATTATGATGGGGACCTTGAAGCTGCAAGATCTTACTATTCCCAATCTTTGGATGTTCGTCGCAATGCAATCAAGGATCGTTCAAATGTTCCATCACAGgttagcaactgctttcacaatgtgtgcttattga--tttgcatatttgatatgaactgttattttcatat-accatgtgatgtttgatttgaatctaaagatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31457812|gb|CD399840.1|CD399840
EST:     CGCGATGTTGTCAAACACAATTCAAATGTTCCATCCCAG                         GTGTTAGACGTTGCTGTCTCTCTTGCAAAAGTTGCGGATGTGGACAGAAAT
genomic: CGCGATGTTGTCAAACACAATTCAAATGTTCCATCCCAGgttggttatt ... tttattttagGTGTTAGACGTTGCTGTCTCTCTTGCAAAAGTTGCGGATGTGGACAGAAAT
EST: gi|22525859|gb|BU084670.1|BU084670
EST:     TGAATGTTCGGCGCGATGTTGTCAAACACAATTCAAATGTTCCATCCCAG                         GTGTTAGACGTTGCTGTCTCTCTTGCAAAAGTTGCGGATGTGGACAGAAAT
genomic: TGAATGTTCGGCGCGATGTTGTCAAACACAATTCAAATGTTCCATCCCAGgttggttatt ... tttattttagGTGTTAGACGTTGCTGTCTCTCTTGCAAAAGTTGCGGATGTGGACAGAAAT