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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGCAAAGGAAATACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaactccagaactgtcttctagaatgtttgaagtcataactagctactcgatgagaagtaatattaacaaaatctaacttggtttttcttatg...

Basic information

species Glycine max
transcript GLYMA06G45160.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G45160.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g57220.1 (Oryza sativa), 5'ss of exon 5
AATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGCAAAGGAAATACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgt-tgaactccagaactgtcttctagaatgtttgaagtcataactagctactcgatgagaagtaatattaacaaaatctaacttggtttttcttatg
|| |||||||| || ||||| || ||||||||||||||| |||| || |||||| | || || |||||||| || ||| |||||||| |  ||| |||||||| || | |  |  ||   |   || ||      ||   ||     |  | |     |   |    || |   | || | ||             || | 
AACTGGCCACCCTTCTTCCCTATTATTCATCATGACATTTCAAATGAGATACCAATCCACCTACAAAGGATGCAATACCTTGCATTTTCTTCATTGTTGGgtaagtgttagttttagttttaagttttaactctctttttgttccctcatgttgggaaagctgtcacaagaactaaaatacctggtggaaccacaattct-

upper sequence: GLYMA06G45160.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G169773_T02 (Zea mays), 5'ss of exon 5
AATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGCAAAGGAAATACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaactccagaactgtcttctagaatgtttgaagtcataactagctactcgatgagaagtaatattaacaaaatctaacttggtttttcttatg-------
||||||||||| ||| | ||||| ||||||||||||||| | || || |||||| | || || |||||||| |||||| | || ||| |  ||   ||||||| ||     ||      || | |||    | |     |  |||||| |      || |  || ||||  |    |  || |  ||     | | ||||       
AATTGGCCACCCTTTATGCCCATTATTCATCATGACATTTCGAACGAGATACCAATTCACCTGCAAAGGATGCAGTACCTGGCGTTTTCTTCACTATTGGgtaagtgtcgatcacttgttgccctct----tatcgtgggaaataacttgaagaaagaagtaaattaat--tggtgacctc-attttttacatccatatgtcgaaat

upper sequence: GLYMA06G45160.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv12s0059g01930.t01 (Vitis vinifera), 5'ss of exon 5
AATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGCAAAGGAAATACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaactccagaactgtcttctagaatgtttgaagtcataactagctactcgatgagaagtaatattaacaaaatc-taacttggtttttcttatg---
||||||||||| ||||||||| | |||||||||||||||||||| ||||||||| | ||||  || | | | |||||| ||||||| || ||||  |||||||||| ||||   | |    | ||  | |    || ||||   || |     | | | | ||  |  | ||    ||  | ||  |   ||| |||| |    
AATTGGCCACCATTTTTCCCCCTTATTCATCATGACATTGCAAATGAAATACCAATCCATCAACAGAAGTTGCAGTACGTTGCATTCACGACATATTTGGgtatgt-gaaccttaaagtcctgtttgatagaagttcaagtttcaaatgt---cccaaagtgattttctcttgtggaatccatagatgcatttctcttctcttt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162286177|gb|FC456625.1|FC456625
EST:     ACATTGCATTTACAACATGGTTGG                         GTTTGGTTCTGTGTCTTTTATGGAATATTGTGGCAGTTACTACTGCTTGGA
genomic: ACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGA
EST: gi|13181293|gb|BG352633.1|BG352633
EST:     ACCA-TACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGG                         GTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGA
genomic: ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGA
EST: gi|298178903|gb|HO024638.1|HO024638
EST:     ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGG                         GTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACT
genomic: ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACT
EST: gi|21887940|gb|BQ741153.1|BQ741153
EST:     ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGG                         GTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGA
genomic: ACCAGTACATCTTCAAAGGATCCAGTACATTGCATTTACAACATGGTTGGgtatgttgaa ... atatctgcagGTTTGGTTCTGTGTCTTTTGTGGAATATTGTGGCAGTTACTACTGCTTGGA