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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGGgtatgatgatactcatccctcatatttcatcacaaaaagtagtttgcaccaaatatacacacccctatacaaagctaaattactaactattcattagtgttgtcataatcatttattgcttttaggatgcttcttattctgtagttaatgttgaatcaagcag

Basic information

species Glycine max
transcript GLYMA06G41510.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 5'ss of exon 5
GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGGgtatg---atgatactcatccctcatatttcatcacaaaaagtagtttgcaccaaatatacacacccctatacaaagctaaattactaactattcattagtgttgtcataatcatttattgcttttaggatgcttcttattctgtagttaatgttgaatcaagcag
|| |||||||||||||||||  ||||||||||||||||||| ||  || |||||||||| ||||||||  |||||     ||  |  |  ||  | | || |||    |   |      |  |     ||        | | |  ||    |                                                                                      
GCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGgtaaacatatcttctttctctttgaaatctcagtctattgaaccacctcaagtttctaatggtgatcttctttaacttcag-------------------------------------------------------------------------------------

upper sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 6
lower sequence: AT5G54590.1 (Arabidopsis thaliana), 5'ss of exon 5
----------------------------GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGGgtatg---atgatactcatccctcatatttcatcacaaaaagtagtttgcaccaaatatacacacccctatacaaagctaaattactaactattcattagtgttgtcataatcatttattgcttttaggatgcttcttattctgtagttaatgttgaatcaagcag
                            || |||||||||||||||||  ||||||||||||||||||| ||  || |||||||||| ||||||||  |||||     ||  |  |  ||  | | || |||    |   |      |  |     ||        | | |  ||    |                                                                                      
AAACTCATGTTCTAATCAATTGTTCCAGGCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGGgtaaacatatcttctttctctttgaaatctcagtctattgaaccacctcaagtttctaatggtgatcttctttaacttcag-------------------------------------------------------------------------------------

upper sequence: GLYMA06G41510.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0014g04960.t01 (Vitis vinifera), 5'ss of exon 5
GCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGGgtatgatgatactcatccctcatatttcatcacaaaaagtagtttgcaccaaat-atacacacccctatacaaagctaaattactaactattcattagtgttgtcataatcatttattgcttttaggatgcttcttattctgtagttaatgttgaatcaagcag
|| ||||||||||| || || || || |||||||| ||||||||||| ||||| || ||||||||||| ||||||||     | |  |   |    ||   |   |     |||   | |  | || |||  ||     | | |||  | | ||||    ||||  |   ||                                                                
GCTGTTCCTCCTGTCATACACCGGGACATCAAATCATCCAATATTCTATTGGACCAGTCCATGAGAGCAAGGgtatgcctcaatttttatttttatttgttttttatttcttagaaagaaagacatgataagcataagaaaaaaaaaatgatttacaccatatttgtccatg----------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014430|gb|CX701172.1|CX701172
EST:     GAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGG                         GTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCT
genomic: GAGATATCAAATCTTCCAATATTCTGTTGGATCAATCCATGAGAGCCAGGgtatgatgat ... aatcaagcagGTTGCTGATTTTGGACTTTCAAGAGAAGAGATGGTGGATAAACATGCAGCT