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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATACAAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagatttggtccctactaattgctgcttattataaaatactagtttgacactcttgtatttcatttgttttcttccag

Basic information

species Glycine max
transcript GLYMA06G39770.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G39770.1 (Glycine max), 5'ss of exon 6
lower sequence: AT3G20630.1 (Arabidopsis thaliana), 5'ss of exon 6
ACAATACAAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagatttggtccctactaattgctgcttattataaaatactagtttgacactcttgtatttcatttgttttcttccag
| |||||||||||||||||||| || || ||||| |||||| ||||| | |  ||| ||||||||||||||||||| ||| | |||||| |||| ||||||||  | |  |    |  |||||      ||| |    | || |||     ||  ||    |   || | || | ||||
AAAATACAAATTTTGATTGGAACCGTATACAAGAGAGTGGAAAAGAATTGGTGCCAGTTTTTGGACCTGGATATACCGGACTTGTCAATCTTGGGAACAGgtac-tctaatggaaa--aattgtcagggatt-tcgtttccttgttgatgtcttatgcccatttcttttcttttgccag

upper sequence: GLYMA06G39770.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv19s0014g03920.t01 (Vitis vinifera), 5'ss of exon 6
ACAATACAAATTTTGATTGGAATCGAATCCAAGAAAGTGGACAAGAAGTAGATCCAATTTTTGGACCTGGATATACAGGATTGGTCAATATTGGAAACAGgtagatttggtccctacta-attgctg--cttattataa--aatactagtttgacactcttgtatttca--tttgttttcttccag----------------------------------------------------------------------------------------------
| ||||| |||||||||||||| ||||| |||||||||||||||||||| || ||| | ||||||||||| ||||||||| | |||||| |||||||||||||   | ||||| |   |  ||||||  |  | |||    | | || ||||    ||| ||     ||  || | |  |    |                                                                                               
AGAATACCAATTTTGATTGGAACCGAATTCAAGAAAGTGGACAAGAAGTTGAACCACTATTTGGACCTGGCTATACAGGACTTGTCAATCTTGGAAACAGgtaa--taggtccttgggatgttgctgggcccaatattgtcatttcttgtttcttgctcctgaggcccagcttaggtggcaagaaattggatggggatgttgaggcgcaaggtttaactcaatgttaacaaaaatacctataaaaatattgttcttctttgctcatttaatttcttgcag